Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   DQM62_RS00785 Genome accession   NZ_LS483418
Coordinates   116388..116681 (+) Length   97 a.a.
NCBI ID   WP_011921722.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10234     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111388..121681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS00755 (NCTC10234_00146) - 112417..112782 (+) 366 WP_002936568.1 DUF1033 family protein -
  DQM62_RS00760 (NCTC10234_00147) - 112817..113760 (-) 944 Protein_106 S66 family peptidase -
  DQM62_RS00765 (NCTC10234_00148) comYA 113846..114796 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM62_RS00770 (NCTC10234_00149) comYB 114708..115745 (+) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM62_RS00775 (NCTC10234_00150) comYC 115747..116028 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM62_RS00780 (NCTC10234_00151) comGD 116009..116416 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  DQM62_RS00785 (NCTC10234_00152) comYE 116388..116681 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQM62_RS00790 (NCTC10234_00153) comGF/cglF 116668..117102 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM62_RS00795 (NCTC10234_00154) comGG 117080..117490 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  DQM62_RS00800 (NCTC10234_00155) comYH 117547..118500 (+) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  DQM62_RS00805 (NCTC10234_00156) - 118550..119737 (+) 1188 WP_012775473.1 acetate kinase -
  DQM62_RS00810 (NCTC10234_00157) - 120051..120602 (+) 552 WP_012775474.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10817.70 Da        Isoelectric Point: 9.8348

>NTDB_id=1140936 DQM62_RS00785 WP_011921722.1 116388..116681(+) (comYE) [Streptococcus suis strain NCTC10234]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1140936 DQM62_RS00785 WP_011921722.1 116388..116681(+) (comYE) [Streptococcus suis strain NCTC10234]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

51.546

100

0.515
  comYE Streptococcus mutans UA159

51.546

100

0.515
  comGE/cglE Streptococcus pneumoniae Rx1

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae D39

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae R6

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae TIGR4

38.043

94.845

0.361

Multiple sequence alignment