Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DQN54_RS02945 Genome accession   NZ_LS483417
Coordinates   531888..532154 (+) Length   88 a.a.
NCBI ID   WP_001828576.1    Uniprot ID   A0A149VMR9
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 531387..531611 531888..532154 flank 277


Gene organization within MGE regions


Location: 531387..532154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS02940 - 531387..531762 (+) 376 Protein_548 helix-turn-helix domain-containing protein -
  DQN54_RS02945 (NCTC11902_00548) HI0659 531888..532154 (+) 267 WP_001828576.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9679.25 Da        Isoelectric Point: 4.6537

>NTDB_id=1140862 DQN54_RS02945 WP_001828576.1 531888..532154(+) (HI0659) [Streptococcus pneumoniae strain NCTC11902]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1140862 DQN54_RS02945 WP_001828576.1 531888..532154(+) (HI0659) [Streptococcus pneumoniae strain NCTC11902]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A149VMR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

87.5

0.5

Multiple sequence alignment