Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQN57_RS09580 Genome accession   NZ_LS483415
Coordinates   55273..55368 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8304     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50273..60368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN57_RS00325 (NCTC8304_00064) purK 50337..51410 (+) 1074 WP_172453930.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQN57_RS00330 (NCTC8304_00065) - 51412..52830 (+) 1419 WP_011888524.1 hypothetical protein -
  DQN57_RS00335 (NCTC8304_00066) purB 52850..54142 (+) 1293 WP_111705416.1 adenylosuccinate lyase -
  DQN57_RS00340 (NCTC8304_00067) comR 54277..55188 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQN57_RS09580 (NCTC8304_00068) comS 55273..55368 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQN57_RS00345 (NCTC8304_00069) ruvB 55415..56413 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQN57_RS00350 (NCTC8304_00070) - 56551..56988 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQN57_RS00355 (NCTC8304_00071) - 57011..57412 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  DQN57_RS00360 (NCTC8304_00072) - 57409..59184 (+) 1776 WP_111705417.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1140843 DQN57_RS09580 WP_198462994.1 55273..55368(+) (comS) [Streptococcus pyogenes strain NCTC8304]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1140843 DQN57_RS09580 WP_198462994.1 55273..55368(+) (comS) [Streptococcus pyogenes strain NCTC8304]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment