Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | DQN44_RS01210 | Genome accession | NZ_LS483414 |
| Coordinates | 213220..214581 (+) | Length | 453 a.a. |
| NCBI ID | WP_030127062.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain NCTC13736 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 177650..213139 | 213220..214581 | flank | 81 |
Gene organization within MGE regions
Location: 177650..214581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN44_RS01040 (NCTC13736_00203) | - | 177650..178846 (+) | 1197 | WP_002986345.1 | quaternary amine ABC transporter ATP-binding protein | - |
| DQN44_RS01045 (NCTC13736_00204) | - | 178862..180589 (+) | 1728 | WP_020904865.1 | ABC transporter permease/substrate binding protein | - |
| DQN44_RS01050 (NCTC13736_00205) | polA | 180720..183362 (+) | 2643 | WP_020904866.1 | DNA polymerase I | - |
| DQN44_RS01055 (NCTC13736_00206) | - | 183549..184004 (+) | 456 | WP_002986334.1 | CoA-binding protein | - |
| DQN44_RS01060 (NCTC13736_00207) | perR | 184056..184523 (+) | 468 | WP_002987920.1 | peroxide-responsive transcriptional repressor PerR | - |
| DQN44_RS01065 | - | 184743..184979 (+) | 237 | WP_015055907.1 | hypothetical protein | - |
| DQN44_RS01070 (NCTC13736_00209) | - | 185201..186535 (+) | 1335 | WP_002987923.1 | phosphoadenosine phosphosulfate reductase | - |
| DQN44_RS01075 (NCTC13736_00210) | - | 186528..187058 (+) | 531 | WP_002987925.1 | IbrB-like domain-containing protein | - |
| DQN44_RS09835 | - | 187105..187254 (-) | 150 | Protein_159 | ISL3 family transposase | - |
| DQN44_RS01085 | - | 187387..188537 (-) | 1151 | Protein_160 | IS3 family transposase | - |
| DQN44_RS01095 (NCTC13736_00215) | - | 188615..189925 (-) | 1311 | WP_020904872.1 | SLC13 family permease | - |
| DQN44_RS01100 (NCTC13736_00216) | nadC | 190149..191021 (+) | 873 | WP_021775416.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| DQN44_RS01110 (NCTC13736_00219) | - | 192718..193581 (-) | 864 | WP_011888568.1 | DUF975 family protein | - |
| DQN44_RS10160 | - | 193618..193803 (+) | 186 | WP_002986321.1 | hypothetical protein | - |
| DQN44_RS01120 (NCTC13736_00220) | tgt | 193800..194942 (+) | 1143 | WP_002986319.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| DQN44_RS01125 (NCTC13736_00221) | - | 195160..195471 (+) | 312 | WP_002987947.1 | CHY zinc finger protein | - |
| DQN44_RS01130 (NCTC13736_00222) | - | 195475..196014 (+) | 540 | WP_002986314.1 | biotin transporter BioY | - |
| DQN44_RS01135 (NCTC13736_00223) | - | 196154..196933 (+) | 780 | WP_020904876.1 | MBL fold metallo-hydrolase | - |
| DQN44_RS01140 (NCTC13736_00224) | tadA | 196933..197448 (+) | 516 | WP_002992549.1 | tRNA adenosine(34) deaminase TadA | - |
| DQN44_RS01145 (NCTC13736_00225) | - | 198062..199294 (-) | 1233 | WP_009880892.1 | transglutaminase domain-containing protein | - |
| DQN44_RS01155 (NCTC13736_00227) | speG | 199694..200398 (+) | 705 | WP_020833236.1 | streptococcal pyrogenic exotoxin SpeG | - |
| DQN44_RS01160 (NCTC13736_00229) | - | 200854..202203 (+) | 1350 | WP_014635263.1 | glucose-6-phosphate isomerase | - |
| DQN44_RS01165 | - | 202551..204059 (-) | 1509 | WP_030127065.1 | helix-turn-helix domain-containing protein | - |
| DQN44_RS01170 (NCTC13736_00231) | - | 204747..205418 (+) | 672 | WP_111705975.1 | rhomboid family intramembrane serine protease | - |
| DQN44_RS01175 (NCTC13736_00232) | galU | 205519..206418 (-) | 900 | WP_002986125.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| DQN44_RS01180 (NCTC13736_00233) | - | 206451..207467 (-) | 1017 | WP_002986123.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| DQN44_RS01185 (NCTC13736_00234) | - | 207763..208212 (+) | 450 | WP_002986120.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DQN44_RS01190 (NCTC13736_00235) | - | 208205..209911 (+) | 1707 | WP_021733121.1 | ABC transporter ATP-binding protein | - |
| DQN44_RS01195 (NCTC13736_00236) | - | 209914..211698 (+) | 1785 | WP_030127063.1 | ABC transporter ATP-binding protein | - |
| DQN44_RS01200 (NCTC13736_00237) | - | 211816..212583 (+) | 768 | WP_002986113.1 | epoxyqueuosine reductase QueH | - |
| DQN44_RS01205 (NCTC13736_00238) | - | 212693..213139 (+) | 447 | WP_002986111.1 | dUTP diphosphatase | - |
| DQN44_RS01210 (NCTC13736_00239) | radA | 213220..214581 (+) | 1362 | WP_030127062.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 49385.69 Da Isoelectric Point: 6.3735
>NTDB_id=1140743 DQN44_RS01210 WP_030127062.1 213220..214581(+) (radA) [Streptococcus pyogenes strain NCTC13736]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTNMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTNMSEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS
Nucleotide
Download Length: 1362 bp
>NTDB_id=1140743 DQN44_RS01210 WP_030127062.1 213220..214581(+) (radA) [Streptococcus pyogenes strain NCTC13736]
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTAACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCAGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTGCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATTGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGACGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGATTTACCAAGGTCTATGCTCCTAAAAATGCTTT
GCAAGGCATTGACATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG
ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT
CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTAACATGTCTGAATTTAATAGAGTT
CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCAGGTATTGGAAAATCCACCTTACTCTTGCA
GGTATCCACGCAGCTCGCTAATAAGGGAACGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA
AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTGCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATTGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA
AAATCAAGACGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA
TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGATTTACCAAGGTCTATGCTCCTAAAAATGCTTT
GCAAGGCATTGACATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
85.872 |
100 |
0.859 |
| radA | Streptococcus pneumoniae D39 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae R6 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae Rx1 |
85.651 |
100 |
0.857 |
| radA | Streptococcus mitis SK321 |
85.651 |
100 |
0.857 |
| radA | Streptococcus pneumoniae TIGR4 |
85.651 |
100 |
0.857 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
61.369 |
100 |
0.614 |