Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQN40_RS10840 Genome accession   NZ_LS483413
Coordinates   2153667..2154380 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148667..2159380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS10830 (NCTC7136_02240) treC 2149737..2151365 (-) 1629 WP_002991331.1 alpha,alpha-phosphotrehalase -
  DQN40_RS10835 (NCTC7136_02241) treP 2151432..2153456 (-) 2025 WP_084916277.1 PTS system trehalose-specific EIIBC component -
  DQN40_RS10840 (NCTC7136_02242) treR 2153667..2154380 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQN40_RS10850 (NCTC7136_02244) - 2154663..2154929 (-) 267 WP_080562187.1 winged helix-turn-helix transcriptional regulator -
  DQN40_RS10855 (NCTC7136_02245) - 2155188..2156045 (+) 858 WP_111679466.1 VOC family protein -
  DQN40_RS10860 (NCTC7136_02246) yaaA 2156087..2156818 (+) 732 WP_003062528.1 peroxide stress protein YaaA -
  DQN40_RS10865 (NCTC7136_02247) nrdG 2156991..2157605 (-) 615 WP_003058750.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQN40_RS10870 (NCTC7136_02248) - 2157609..2158112 (-) 504 WP_003058815.1 GNAT family N-acetyltransferase -
  DQN40_RS10875 (NCTC7136_02249) - 2158121..2159056 (-) 936 WP_003058797.1 Gfo/Idh/MocA family oxidoreductase -
  DQN40_RS11440 (NCTC7136_02250) - 2159085..2159231 (-) 147 WP_003053094.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1140727 DQN40_RS10840 WP_002982243.1 2153667..2154380(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1140727 DQN40_RS10840 WP_002982243.1 2153667..2154380(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment