Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQN40_RS10365 Genome accession   NZ_LS483413
Coordinates   2045272..2046633 (-) Length   453 a.a.
NCBI ID   WP_111679438.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040272..2051633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS10340 (NCTC7136_02142) - 2040993..2042261 (-) 1269 WP_003060892.1 MFS transporter -
  DQN40_RS10345 (NCTC7136_02143) - 2042356..2043057 (-) 702 WP_003053382.1 hypothetical protein -
  DQN40_RS10350 (NCTC7136_02144) - 2043061..2043507 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  DQN40_RS10355 (NCTC7136_02145) - 2043736..2044452 (-) 717 WP_015058072.1 TIGR00266 family protein -
  DQN40_RS10360 (NCTC7136_02146) - 2044588..2045082 (-) 495 WP_003053380.1 carbonic anhydrase -
  DQN40_RS10365 (NCTC7136_02147) radA 2045272..2046633 (-) 1362 WP_111679438.1 DNA repair protein RadA Machinery gene
  DQN40_RS10370 (NCTC7136_02148) - 2046716..2047162 (-) 447 WP_003053378.1 dUTP diphosphatase -
  DQN40_RS10375 (NCTC7136_02149) - 2047270..2048037 (-) 768 WP_014612596.1 epoxyqueuosine reductase QueH -
  DQN40_RS10380 (NCTC7136_02150) - 2048157..2049941 (-) 1785 WP_084916675.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49295.50 Da        Isoelectric Point: 5.8146

>NTDB_id=1140725 DQN40_RS10365 WP_111679438.1 2045272..2046633(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTNIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1140725 DQN40_RS10365 WP_111679438.1 2045272..2046633(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTTCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTTACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG
TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATTGGCATCTTTGAAATGCAGTC
TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAATATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.093

100

0.861
  radA Streptococcus pneumoniae D39

85.872

100

0.859
  radA Streptococcus pneumoniae R6

85.872

100

0.859
  radA Streptococcus pneumoniae Rx1

85.872

100

0.859
  radA Streptococcus mitis SK321

85.872

100

0.859
  radA Streptococcus pneumoniae TIGR4

85.872

100

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623

Multiple sequence alignment