Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQN40_RS09360 Genome accession   NZ_LS483413
Coordinates   1839753..1840478 (-) Length   241 a.a.
NCBI ID   WP_012767492.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834753..1845478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS09330 (NCTC7136_01936) - 1835133..1835813 (+) 681 WP_050199302.1 hypothetical protein -
  DQN40_RS09335 (NCTC7136_01937) - 1835947..1837026 (+) 1080 WP_111679399.1 tyrosine-type recombinase/integrase -
  DQN40_RS09345 (NCTC7136_01939) trmB 1837225..1837860 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQN40_RS09350 (NCTC7136_01940) - 1837860..1838651 (-) 792 WP_111679401.1 phosphotransferase family protein -
  DQN40_RS09355 (NCTC7136_01941) - 1838716..1839750 (-) 1035 WP_084916754.1 ABC transporter permease -
  DQN40_RS09360 (NCTC7136_01942) pptA 1839753..1840478 (-) 726 WP_012767492.1 ABC transporter ATP-binding protein Regulator
  DQN40_RS09365 (NCTC7136_01943) - 1840550..1840969 (+) 420 WP_012767493.1 HIT family protein -
  DQN40_RS09370 (NCTC7136_01944) - 1840966..1841295 (+) 330 WP_003057072.1 hypothetical protein -
  DQN40_RS09375 (NCTC7136_01945) - 1841453..1842721 (-) 1269 WP_041789135.1 LCP family protein -
  DQN40_RS09380 (NCTC7136_01946) - 1842733..1843254 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  DQN40_RS09385 (NCTC7136_01947) tsaE 1843247..1843690 (-) 444 WP_065361353.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQN40_RS09390 (NCTC7136_01948) - 1843867..1845327 (-) 1461 WP_003057030.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26416.65 Da        Isoelectric Point: 4.6450

>NTDB_id=1140719 DQN40_RS09360 WP_012767492.1 1839753..1840478(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYQGEISIDGLTLAADPATYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLKMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLELEKGKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLADLQDAFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1140719 DQN40_RS09360 WP_012767492.1 1839753..1840478(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGTTAAACATTGAAAATCTAACGGGGGGTTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
TGAATTAGTTGGGTTGATAGGCTTAAATGGAGCTGGAAAATCAACAACTATCAATGAAATTATTGGTTTTTTAAAACCTT
ATCAGGGAGAAATCTCGATTGATGGACTAACCTTGGCTGCAGATCCAGCTACCTATCGTAAGAAAATTGGATTTATCCCA
GAGACACCTAGCCTCTATGAAGAATTAACTTTGGCAGAGCATATTAATACTGTGGCTATGGCCTATGATATTGATGTGGA
ATTGGCACAAAAACGAGCAGAACCGTTTTTAAAGATGTTCCGCTTAGCTGATAAATTAGATTGGTTTCCTGTTCATTTTT
CAAAAGGCATGAAGCAAAAAGTCATGATTATCTGTGCTTTTGTGATTGATCCAAGTCTGTTTATCCTTGACGAGCCATTT
TTAGGATTAGACCCGTTGGCTATCTCAGACTTGATTCAGACTTTGGAGCTTGAAAAAGGCAAAGGCAAATCGATTTTAAT
GAGTACTCATGTGCTTGACTCTGCTGAGAAAATGTGTGATCGTTTTGTCATTCTGCATCATGGTCAAGTACGGGCTCAGG
GAACGCTTGCTGACTTGCAGGATGCCTTTGGTGATGCTTCTGCTAGCCTTAACGATATTTACCTGGCATTGACAAAAGAG
GGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.477

99.17

0.739

Multiple sequence alignment