Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQN40_RS02020 Genome accession   NZ_LS483413
Coordinates   378769..379695 (+) Length   308 a.a.
NCBI ID   WP_084916649.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 373769..384695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS02010 (NCTC7136_00413) amiA 375231..377201 (+) 1971 WP_042357846.1 peptide ABC transporter substrate-binding protein Regulator
  DQN40_RS02015 (NCTC7136_00414) amiC 377267..378769 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  DQN40_RS02020 (NCTC7136_00415) amiD 378769..379695 (+) 927 WP_084916649.1 oligopeptide ABC transporter permease OppC Regulator
  DQN40_RS02025 (NCTC7136_00416) amiE 379704..380774 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  DQN40_RS02030 (NCTC7136_00417) amiF 380767..381690 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  DQN40_RS02035 (NCTC7136_00418) - 381717..382757 (-) 1041 Protein_349 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34872.93 Da        Isoelectric Point: 9.2260

>NTDB_id=1140688 DQN40_RS02020 WP_084916649.1 378769..379695(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRFRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1140688 DQN40_RS02020 WP_084916649.1 378769..379695(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTTTGGTATGGAGC
GCGTAATTCTATCTTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATTATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTTCCGTGATTTGGAGTACAACCTTGCTAGCCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
TAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.727

100

0.727
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment