Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   DQN24_RS01650 Genome accession   NZ_LS483411
Coordinates   331905..332201 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain NCTC11426     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 326905..337201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN24_RS01640 (NCTC11426_00324) - 328261..331283 (+) 3023 Protein_318 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  DQN24_RS01645 (NCTC11426_00325) - 331553..331912 (+) 360 WP_005694481.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DQN24_RS01650 (NCTC11426_00326) HI0659 331905..332201 (+) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  DQN24_RS01655 (NCTC11426_00327) - 332385..334301 (+) 1917 WP_111695306.1 ABC transporter ATP-binding protein -
  DQN24_RS01660 (NCTC11426_00328) - 334311..334847 (+) 537 WP_111695307.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  DQN24_RS01665 (NCTC11426_00329) - 334863..335414 (+) 552 WP_042593999.1 Sua5/YciO/YrdC/YwlC family protein -
  DQN24_RS01670 (NCTC11426_00330) aroE 335418..336236 (+) 819 WP_111695308.1 shikimate dehydrogenase -
  DQN24_RS01675 (NCTC11426_00331) - 336233..336790 (+) 558 WP_111695309.1 DNA-3-methyladenine glycosylase I -

Sequence


Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=1140648 DQN24_RS01650 WP_005650837.1 331905..332201(+) (HI0659) [Haemophilus influenzae strain NCTC11426]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1140648 DQN24_RS01650 WP_005650837.1 331905..332201(+) (HI0659) [Haemophilus influenzae strain NCTC11426]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTACGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains


Predicted by InterproScan.

(41-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1


Multiple sequence alignment