Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQN24_RS00280 Genome accession   NZ_LS483411
Coordinates   58611..59330 (-) Length   239 a.a.
NCBI ID   WP_111695216.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11426     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53611..64330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN24_RS00260 (NCTC11426_00050) nrdR 53735..54184 (-) 450 WP_021034780.1 transcriptional regulator NrdR -
  DQN24_RS00265 (NCTC11426_00051) recC 54246..57605 (-) 3360 WP_111695215.1 exodeoxyribonuclease V subunit gamma -
  DQN24_RS00270 (NCTC11426_00052) comQ 57651..57938 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  DQN24_RS00275 (NCTC11426_00053) comP 57931..58614 (-) 684 WP_054249353.1 DUF2572 family protein Machinery gene
  DQN24_RS00280 (NCTC11426_00054) comO 58611..59330 (-) 720 WP_111695216.1 PulJ/GspJ family protein Machinery gene
  DQN24_RS00285 (NCTC11426_00055) comN 59330..59842 (-) 513 WP_054249351.1 pilus assembly FimT family protein Machinery gene
  DQN24_RS00290 (NCTC11426_00056) suhB 60042..60845 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  DQN24_RS00295 (NCTC11426_00057) nrfE 60955..62862 (+) 1908 WP_021034774.1 heme lyase NrfEFG subunit NrfE -
  DQN24_RS00300 (NCTC11426_00058) - 62862..63392 (+) 531 WP_021034773.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26892.27 Da        Isoelectric Point: 9.3761

>NTDB_id=1140643 DQN24_RS00280 WP_111695216.1 58611..59330(-) (comO) [Haemophilus influenzae strain NCTC11426]
MMKTLLKGQILLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
FLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQAPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1140643 DQN24_RS00280 WP_111695216.1 58611..59330(-) (comO) [Haemophilus influenzae strain NCTC11426]
ATGATGAAAACATTATTAAAAGGGCAAATCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TTTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
ATTCTTTTATGATTTAAATAAAAATGGGTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTTGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACGTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAGCCCCAAACATCAGTTATGAAACCTCCCTTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

96.639

99.582

0.962

Multiple sequence alignment