Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   DQN67_RS10070 Genome accession   NZ_LS483410
Coordinates   2219613..2219927 (-) Length   104 a.a.
NCBI ID   WP_027224483.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11404     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2214613..2224927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN67_RS10045 (NCTC11404_02001) - 2215039..2215539 (-) 501 WP_014844283.1 hypothetical protein -
  DQN67_RS10050 (NCTC11404_02002) - 2216031..2216891 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  DQN67_RS10055 (NCTC11404_02003) - 2217008..2218204 (-) 1197 WP_027224485.1 murein transglycosylase A -
  DQN67_RS10060 (NCTC11404_02004) lpp1976 2218314..2218871 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  DQN67_RS10065 (NCTC11404_02005) lpp1977 2218868..2219674 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  DQN67_RS10070 (NCTC11404_02006) lpp1978 2219613..2219927 (-) 315 WP_027224483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DQN67_RS10075 (NCTC11404_02007) hisC 2220087..2221196 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  DQN67_RS10080 (NCTC11404_02008) - 2221233..2221574 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  DQN67_RS10085 (NCTC11404_02009) secF 2221763..2222680 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  DQN67_RS10090 (NCTC11404_02010) secD 2222693..2224549 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  DQN67_RS10095 (NCTC11404_02011) yajC 2224571..2224906 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=1140626 DQN67_RS10070 WP_027224483.1 2219613..2219927(-) (lpp1978) [Legionella pneumophila strain NCTC11404]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1140626 DQN67_RS10070 WP_027224483.1 2219613..2219927(-) (lpp1978) [Legionella pneumophila strain NCTC11404]
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971

Multiple sequence alignment