Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQN21_RS12020 Genome accession   NZ_LS483409
Coordinates   2396562..2397275 (+) Length   237 a.a.
NCBI ID   WP_077497902.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2391562..2402275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS12010 (NCTC13773_02437) treC 2392746..2394377 (-) 1632 WP_077497898.1 alpha,alpha-phosphotrehalase -
  DQN21_RS12015 (NCTC13773_02438) treP 2394392..2396365 (-) 1974 WP_077497900.1 PTS system trehalose-specific EIIBC component -
  DQN21_RS12020 (NCTC13773_02439) treR 2396562..2397275 (+) 714 WP_077497902.1 trehalose operon repressor Regulator
  DQN21_RS12025 (NCTC13773_02440) - 2397572..2398399 (-) 828 WP_077497904.1 class C sortase -
  DQN21_RS12030 (NCTC13773_02441) - 2398587..2400074 (-) 1488 WP_077497906.1 SpaH/EbpB family LPXTG-anchored major pilin -
  DQN21_RS12035 (NCTC13773_02442) - 2400187..2401536 (-) 1350 WP_077497908.1 SpaA isopeptide-forming pilin-related protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27448.44 Da        Isoelectric Point: 7.3315

>NTDB_id=1140593 DQN21_RS12020 WP_077497902.1 2396562..2397275(+) (treR) [Streptococcus gallolyticus strain NCTC13773]
MKKYEQIFKELEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLATLTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAYAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1140593 DQN21_RS12020 WP_077497902.1 2396562..2397275(+) (treR) [Streptococcus gallolyticus strain NCTC13773]
ATGAAAAAATACGAACAAATCTTTAAAGAACTTGAACACGATATCACCTCTGGCATTTACCAAGCAGGCGACTATCTCCC
CACCGAAAATGAGCTAACCCAGACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCCGAAGCAG
GGCTTATTCAGAAAATTCACGGTTCTGGCTCTCAAGTCATCAAGCACGAGCAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAGCTGGTCGACGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTACGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAATCAACTCCACCTCATCATCGCTTACGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGTGCCGAACACCACGTCGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAAAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

72.222

98.734

0.713

Multiple sequence alignment