Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQN21_RS11480 Genome accession   NZ_LS483409
Coordinates   2293504..2294865 (-) Length   453 a.a.
NCBI ID   WP_074581596.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2288504..2299865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS11455 (NCTC13773_02325) - 2288600..2288776 (-) 177 WP_231873057.1 potassium transporter Trk -
  DQN21_RS11460 (NCTC13773_02326) - 2288940..2290106 (-) 1167 WP_077497795.1 CynX/NimT family MFS transporter -
  DQN21_RS11465 (NCTC13773_02327) gltX 2290647..2292104 (-) 1458 WP_012962565.1 glutamate--tRNA ligase -
  DQN21_RS11470 (NCTC13773_02328) - 2292289..2292783 (-) 495 WP_012962566.1 LURP-one-related/scramblase family protein -
  DQN21_RS11475 (NCTC13773_02329) - 2292886..2293380 (-) 495 WP_003066696.1 beta-class carbonic anhydrase -
  DQN21_RS11480 (NCTC13773_02330) radA 2293504..2294865 (-) 1362 WP_074581596.1 DNA repair protein RadA Machinery gene
  DQN21_RS11485 (NCTC13773_02331) - 2294883..2295416 (-) 534 WP_061458130.1 histidine phosphatase family protein -
  DQN21_RS11490 (NCTC13773_02332) - 2295447..2295893 (-) 447 WP_012962568.1 dUTP diphosphatase -
  DQN21_RS11495 (NCTC13773_02333) - 2295987..2297216 (-) 1230 WP_111697150.1 MFS transporter -
  DQN21_RS11500 (NCTC13773_02334) - 2297232..2298434 (-) 1203 WP_077497797.1 MFS transporter -
  DQN21_RS11505 (NCTC13773_02335) - 2298599..2299366 (-) 768 WP_009855078.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49440.76 Da        Isoelectric Point: 6.2712

>NTDB_id=1140591 DQN21_RS11480 WP_074581596.1 2293504..2294865(-) (radA) [Streptococcus gallolyticus strain NCTC13773]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1140591 DQN21_RS11480 WP_074581596.1 2293504..2294865(-) (radA) [Streptococcus gallolyticus strain NCTC13773]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGCCGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCGACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTCGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTCCAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCTAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCCCT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAAAAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62

Multiple sequence alignment