Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   DQN21_RS06885 Genome accession   NZ_LS483409
Coordinates   1357423..1359531 (+) Length   702 a.a.
NCBI ID   WP_009854354.1    Uniprot ID   A0AA94M2S0
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352423..1364531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS06850 (NCTC13773_01391) - 1352856..1353806 (+) 951 WP_014620159.1 polysaccharide deacetylase family protein -
  DQN21_RS06860 (NCTC13773_01393) - 1354385..1354981 (+) 597 WP_009854348.1 TetR/AcrR family transcriptional regulator -
  DQN21_RS06865 (NCTC13773_01394) - 1355061..1355525 (-) 465 WP_077496980.1 hypothetical protein -
  DQN21_RS06870 (NCTC13773_01395) - 1355643..1355843 (+) 201 WP_013643159.1 helix-turn-helix domain-containing protein -
  DQN21_RS06875 (NCTC13773_01396) rplL 1355944..1356312 (-) 369 WP_009854351.1 50S ribosomal protein L7/L12 -
  DQN21_RS06880 (NCTC13773_01397) rplJ 1356381..1356884 (-) 504 WP_009854352.1 50S ribosomal protein L10 -
  DQN21_RS06885 (NCTC13773_01399) clpC 1357423..1359531 (+) 2109 WP_009854354.1 AAA family ATPase Regulator
  DQN21_RS06890 (NCTC13773_01400) - 1359638..1360285 (+) 648 WP_009854355.1 endonuclease III domain-containing protein -
  DQN21_RS06895 (NCTC13773_01401) - 1360394..1361062 (+) 669 WP_009854356.1 YoaK family protein -
  DQN21_RS06900 (NCTC13773_01402) mmuM 1361102..1362052 (-) 951 WP_009854357.1 homocysteine S-methyltransferase -
  DQN21_RS06905 (NCTC13773_01403) - 1362065..1363441 (-) 1377 WP_077496984.1 amino acid permease -
  DQN21_RS06910 (NCTC13773_01404) yihA 1363739..1364332 (-) 594 WP_012962046.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77210.96 Da        Isoelectric Point: 4.7283

>NTDB_id=1140566 DQN21_RS06885 WP_009854354.1 1357423..1359531(+) (clpC) [Streptococcus gallolyticus strain NCTC13773]
MANNNFYGRDPFGNMDDIFNELMGNMGGYNSENRRYLINGREVTPEEFAQYRQTGKLPGNAEYQEGTPASAPKEDGILAK
LGTNLTERARANELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNLVKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPATDVKSLEKEIADQKEKQENAVAKEDYEAALNAKVRIEELQKQIDNHTEGQKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQDDKDKKIMDRIAPYFRPEFLNRFNGIIEFSHLTKEDLNDIVDLMLDEVSKTIAKKGIDLV
VSDAAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=1140566 DQN21_RS06885 WP_009854354.1 1357423..1359531(+) (clpC) [Streptococcus gallolyticus strain NCTC13773]
ATGGCAAATAATAATTTTTACGGAAGAGATCCTTTTGGAAATATGGATGACATTTTTAATGAACTTATGGGTAACATGGG
CGGGTACAATTCAGAAAACAGACGCTATTTGATTAATGGGCGCGAAGTTACTCCTGAAGAATTTGCACAATATCGCCAAA
CAGGTAAGCTCCCCGGAAACGCGGAATACCAAGAAGGGACGCCTGCTTCTGCTCCTAAAGAAGATGGTATCTTGGCAAAA
TTAGGAACAAACTTGACCGAACGCGCACGCGCTAACGAACTCGACCCTGTTATTGGACGTAACAAAGAAATCCAAGAAAC
TGCTGAAATCTTGTCACGTCGTACCAAAAACAACCCTGTCCTTGTGGGGGACGCAGGTGTTGGTAAAACAGCCGTTGTCG
AAGGCTTAGCGCAAGCTATTGTCAATGGTGATGTGCCAGCAGCTATCAAAAATAAAGAAATTATTTCTATTGATATTTCT
GGTCTTGAAGCTGGCACACAATATCGTGGTGCTTTTGAAGAAAATATCCAAAACCTTGTCAAAGAAGTTAAAGACGCTGG
TAATATCATTCTCTTCTTTGATGAAATCCACCAAATTTTAGGCGCAGGGTCAACTGGTGGCGACTCTGGTTCGAAAGGCT
TAGCTGACATTCTCAAACCTGCACTTTCTCGTGGCGAATTGACCGTTATCGGTGCAACAACTCAAGACGAATATCGTAAT
ACTATTTTGAAGAATGCTGCGCTCGCTCGCCGTTTCAACGAAGTCAAAGTAAATGCTCCTTCTGCTCAAGATAGCTTTAA
TATTTTAATGGGAATTCGTGATTTATATGAAAAACACCACAACGTTATTCTCCCTGATAATGTGTTAAAAGCCGCTGTTG
ATTTTTCAATTCAATATATCCCACAACGTAGTTTGCCAGATAAAGCTATTGACTTGATTGATATGACTGCTGCTCATTTG
GCTGCTCAACACCCTGCAACTGATGTCAAATCTCTTGAAAAGGAAATTGCAGACCAAAAAGAAAAACAAGAAAATGCTGT
GGCTAAAGAAGATTACGAAGCAGCCCTCAATGCCAAAGTTCGTATCGAAGAATTGCAAAAACAAATTGACAACCATACGG
AAGGGCAAAAAGTTACAGCTACCGTTAATGATGTGGCAGAATCTGTCGAACGATTAACTGGTGTTCCCGTGTCAAATATG
GGAGCAAGTGATATTGAACGCTTGAAAGAATTAGCTAGCCGTTTGAAAGGTAAAGTCATCGGACAAGATGAGGCTGTTGA
AGCCGTCTCACGTGCCATTCGTCGTAACCGTGCTGGTTTTGACGAAGGTAATCGACCAATTGGTAGTTTCCTCTTTGTCG
GTCCTACTGGCGTTGGTAAGACAGAGCTTGCTAAACAATTAGCCCTTGATATGTTCGGCTCAAAAGATGCTATTATCCGC
CTTGACATGTCTGAATACTCTGATCGCACAGCCGTTTCTAAATTAATCGGTACAACTGCTGGCTATGTTGGCTACGACGA
CAATAGCAACACGCTTACTGAACGTGTTCGTCGTAACCCATACTCAATTGTTCTTCTTGATGAAATTGAAAAAGCTGACC
CTCAAGTCATCACACTTCTTCTCCAAGTTTTGGATGATGGTCGTTTGACAGACGGTCAAGGTAATACGATTAACTTTAAG
AATACCGTCATCATTGCTACCTCTAATGCTGGATTCGGCAACGAAGCTTTGACTGGTCAAGATGATAAAGATAAGAAAAT
TATGGATCGTATCGCTCCATACTTCCGCCCAGAATTTCTTAACCGTTTCAACGGTATTATCGAATTCTCTCACTTGACTA
AAGAAGATTTGAACGACATTGTTGACTTAATGCTTGACGAAGTTAGCAAGACCATTGCCAAGAAAGGCATTGATTTGGTG
GTTAGTGATGCTGCTAAACAACACCTTATCGAAGAAGGTTATGATGAAGCCATGGGTGTTCGACCACTCCGCCGTGTCAT
TGAACAAGAAATCCGCGATAAAATCACTGATTTCTACCTCGATCACACAGATGTTAAACACCTTAAAGCTGACATGGTTG
ACGGAGAACTAGTCATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-683)

AAA domain (Cdc48 subfamily) (AAA_2)

(445-604)

AAA lid domain (AAA_lid_9)

(262-355)

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

49.143

99.715

0.49
  clpE Streptococcus mutans UA159

49.451

90.741

0.449
  clpE Streptococcus pneumoniae Rx1

48.513

91.026

0.442
  clpE Streptococcus pneumoniae D39

48.513

91.026

0.442
  clpE Streptococcus pneumoniae R6

48.513

91.026

0.442
  clpE Streptococcus pneumoniae TIGR4

48.58

90.313

0.439
  clpC Bacillus subtilis subsp. subtilis str. 168

45.975

92.023

0.423
  clpC Streptococcus pneumoniae Rx1

41.959

97.436

0.409
  clpC Streptococcus pneumoniae D39

41.959

97.436

0.409
  clpC Streptococcus pneumoniae TIGR4

41.997

97.009

0.407
  clpC Streptococcus thermophilus LMD-9

43.387

88.319

0.383
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.457

88.177

0.383
  clpC Streptococcus thermophilus LMG 18311

43.204

88.034

0.38
  clpC Streptococcus mutans UA159

42.697

88.746

0.379

Multiple sequence alignment