Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQN21_RS04050 Genome accession   NZ_LS483409
Coordinates   743756..745558 (+) Length   600 a.a.
NCBI ID   WP_077496516.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 738756..750558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS04025 (NCTC13773_00810) - 738953..740515 (+) 1563 WP_099046284.1 sensor histidine kinase -
  DQN21_RS04030 (NCTC13773_00811) - 740496..741101 (+) 606 WP_077496510.1 response regulator -
  DQN21_RS04035 (NCTC13773_00812) nagB 741245..741949 (+) 705 WP_077496512.1 glucosamine-6-phosphate deaminase -
  DQN21_RS04040 (NCTC13773_00813) - 742025..742741 (+) 717 WP_061458983.1 pseudouridine synthase -
  DQN21_RS04045 (NCTC13773_00814) - 742795..743766 (+) 972 WP_077496514.1 competence protein CoiA -
  DQN21_RS04050 (NCTC13773_00815) pepF 743756..745558 (+) 1803 WP_077496516.1 oligoendopeptidase F Regulator
  DQN21_RS04055 (NCTC13773_00816) - 745632..746150 (+) 519 WP_009853778.1 GNAT family N-acetyltransferase -
  DQN21_RS04060 (NCTC13773_00817) - 746172..746783 (+) 612 WP_013642868.1 HAD-IA family hydrolase -
  DQN21_RS04065 (NCTC13773_00818) - 746837..747538 (+) 702 WP_009853780.1 O-methyltransferase -
  DQN21_RS04070 (NCTC13773_00819) - 747607..748713 (+) 1107 WP_009853781.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68902.84 Da        Isoelectric Point: 4.5967

>NTDB_id=1140559 DQN21_RS04050 WP_077496516.1 743756..745558(+) (pepF) [Streptococcus gallolyticus strain NCTC13773]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELASLDSDLENAKAYKGHLTASSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKESFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGLLDNADIIFPIVLDDEGKEIQLTHGNFISLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLRMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1140559 DQN21_RS04050 WP_077496516.1 743756..745558(+) (pepF) [Streptococcus gallolyticus strain NCTC13773]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGTCTTGATAGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCATTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAATTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTAATGCAATTGTCTAAAGAATCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTGTTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGGGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGACGA
TGAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTAGCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCGCGTGTTCATCATTTTAAATCAGCACGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCTTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGCTACGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAGAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTGGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATGCTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAGAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGCTTCAAGAGCACCATTT
TCCGTCAAGCACAATTTGCGGAATTTGAAGATATCATTCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAC
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCTACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGGTTGTTCACGGTACACAAGCGGATATTGACCGCTACCTTGATTATCTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATCAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGAGCACATCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703

Multiple sequence alignment