Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQN33_RS09590 Genome accession   NZ_LS483408
Coordinates   1925781..1926494 (+) Length   237 a.a.
NCBI ID   WP_111673572.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920781..1931494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS09580 (NCTC4674_02016) treC 1921877..1923508 (-) 1632 WP_015912053.1 alpha,alpha-phosphotrehalase -
  DQN33_RS09585 (NCTC4674_02017) treP 1923576..1925561 (-) 1986 WP_015912054.1 PTS system trehalose-specific EIIBC component -
  DQN33_RS09590 (NCTC4674_02018) treR 1925781..1926494 (+) 714 WP_111673572.1 trehalose operon repressor Regulator
  DQN33_RS09595 (NCTC4674_02019) - 1926513..1926839 (-) 327 WP_037593124.1 winged helix-turn-helix transcriptional regulator -
  DQN33_RS09600 (NCTC4674_02020) - 1927042..1927902 (+) 861 WP_037593123.1 VOC family protein -
  DQN33_RS09605 (NCTC4674_02021) yaaA 1927955..1928686 (+) 732 WP_015912058.1 peroxide stress protein YaaA -
  DQN33_RS09610 (NCTC4674_02022) nrdG 1928801..1929415 (-) 615 WP_015912059.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQN33_RS09615 (NCTC4674_02023) - 1929420..1929923 (-) 504 WP_015912060.1 GNAT family N-acetyltransferase -
  DQN33_RS09620 (NCTC4674_02024) - 1929892..1930872 (-) 981 WP_037593121.1 Gfo/Idh/MocA family protein -
  DQN33_RS10210 (NCTC4674_02025) - 1930898..1931047 (-) 150 WP_015912062.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27640.91 Da        Isoelectric Point: 9.4778

>NTDB_id=1140528 DQN33_RS09590 WP_111673572.1 1925781..1926494(+) (treR) [Streptococcus uberis strain NCTC4674]
MKKYEQIYKDLESKIAKEIYKIDDFLPTEMALSEDYQASRDTIRKALTLLTKAGLVKKRQGRGTQVIKHHQILFPISELT
SYQELVTFFNMDSKTNVIAIDKLIVDNDTSKLTGFQVNDIIWRVTRQRVVDGVASVLDIDYLSKKLIPTITREIAEHSLY
HYLEKNLHLDIDFALKEVTIDQVNEKDKILLDLGSDKHVVSVKSKVYLSTNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1140528 DQN33_RS09590 WP_111673572.1 1925781..1926494(+) (treR) [Streptococcus uberis strain NCTC4674]
ATGAAGAAATATGAACAAATTTATAAAGATTTAGAATCTAAAATCGCAAAAGAAATCTACAAAATTGACGACTTCTTACC
CACAGAAATGGCCTTAAGTGAAGATTACCAGGCTAGTCGTGACACTATTCGAAAAGCCCTCACTCTCCTAACAAAAGCCG
GACTGGTCAAAAAACGACAAGGACGGGGTACACAAGTTATCAAGCATCATCAAATTCTTTTCCCAATTTCAGAACTGACC
AGTTACCAAGAACTCGTTACTTTTTTTAATATGGATTCCAAAACGAACGTGATTGCCATCGATAAATTAATTGTGGATAA
TGATACCTCAAAATTAACAGGTTTTCAGGTTAATGACATTATTTGGAGGGTCACACGACAAAGAGTTGTCGATGGTGTCG
CATCCGTCCTAGACATCGATTATCTCAGTAAAAAACTAATCCCTACAATAACTCGTGAAATTGCTGAACACTCCTTGTAT
CACTATCTCGAAAAAAATCTTCATCTAGACATTGACTTTGCACTGAAAGAAGTAACCATTGATCAAGTTAACGAGAAAGA
TAAAATACTTCTAGACTTAGGATCAGATAAACATGTTGTCTCTGTCAAATCCAAGGTTTATCTCTCAACTAATGAACAAT
TTCAATTTACTGAAAGTCGTCATAAACTGGAAAAATTCAAATTTGTAGATTTTGCACGAAGAAAACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671

Multiple sequence alignment