Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQN33_RS06615 Genome accession   NZ_LS483408
Coordinates   1336558..1338366 (-) Length   602 a.a.
NCBI ID   WP_046388171.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331558..1343366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS06595 (NCTC4674_01410) prsA 1332657..1333601 (-) 945 WP_111673355.1 peptidylprolyl isomerase PrsA -
  DQN33_RS06600 (NCTC4674_01411) - 1333664..1334371 (-) 708 WP_111673356.1 O-methyltransferase -
  DQN33_RS06605 (NCTC4674_01412) - 1334511..1335740 (-) 1230 WP_012658708.1 OFA family MFS transporter -
  DQN33_RS06610 (NCTC4674_01413) - 1335865..1336506 (-) 642 WP_012658709.1 HAD family hydrolase -
  DQN33_RS06615 (NCTC4674_01414) pepF 1336558..1338366 (-) 1809 WP_046388171.1 oligoendopeptidase F Regulator
  DQN33_RS06620 (NCTC4674_01415) - 1338383..1339327 (-) 945 WP_046388172.1 competence protein CoiA -
  DQN33_RS06625 (NCTC4674_01416) - 1339403..1340548 (-) 1146 WP_046388173.1 MFS transporter -
  DQN33_RS06630 (NCTC4674_01417) - 1340634..1341350 (-) 717 WP_041817639.1 pseudouridine synthase -
  DQN33_RS06635 (NCTC4674_01418) nagB 1341416..1342120 (-) 705 WP_046388175.1 glucosamine-6-phosphate deaminase -
  DQN33_RS06640 (NCTC4674_01419) queA 1342301..1343329 (+) 1029 WP_012658715.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 70253.29 Da        Isoelectric Point: 4.7013

>NTDB_id=1140512 DQN33_RS06615 WP_046388171.1 1336558..1338366(-) (pepF) [Streptococcus uberis strain NCTC4674]
MTDQASQIEEKYTWDLSTIYHSDEDWESDFEQVSKEVEAAKSFAGHLLDSSQQLLEITEVELNLARRIEKLYVYAHMKND
QDTRVSKYQAYYAKASGLYALFSEVFSFYEPELMTISEEELAEFFKEEEGLELYRHFFERLLKNKSHVLSQLEEELLAGA
QEIFNGAEETFSVLDNADILFPVIRDENHQEVEITHGNFIHLMESKNRNVRQSAYEALYSTYQQFQHTYAKTLQTNVKVQ
NYKARVHHYDSARQAAMSANFIPEKVYDTLIEEVNNHLPLLHRYLKLRQEVLGLDSLKMYDVYTPLSEMTMTLSYDEALE
KAEKVLKIFGTEYSDIVHQAFTERWIDVQVKKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLIHETGHSLHSALTRKY
QPYVYGDYSIFLAEIASTTNENILTEALLNDVEDEKQRFTILNHYLDGFRGTIFRQTQFAEFEHAVHLADQNGEVLTSDY
LNHLYADLNEKYYNLPKEENSFIQYEWARIPHFYYNYYVYQYATGFAAANYLAHQVVHGSDEDKENYLNYLKSGNSDYPL
NVIKKAGVDMTDGTYLKAAFKVFEARLNELEELVEKGVHLKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1140512 DQN33_RS06615 WP_046388171.1 1336558..1338366(-) (pepF) [Streptococcus uberis strain NCTC4674]
ATGACAGATCAAGCAAGTCAAATAGAAGAAAAGTATACATGGGATTTAAGTACCATTTATCACAGTGATGAAGACTGGGA
AAGTGATTTTGAACAAGTAAGTAAGGAGGTGGAAGCAGCAAAAAGTTTCGCTGGACACCTACTGGATTCAAGTCAACAAT
TATTAGAAATTACTGAAGTAGAACTGAATTTGGCAAGACGTATTGAAAAACTTTATGTTTATGCTCATATGAAAAATGAT
CAGGATACAAGAGTATCAAAATACCAAGCCTATTATGCTAAGGCATCTGGGCTTTATGCTTTATTTAGTGAAGTTTTCTC
ATTTTATGAGCCTGAATTGATGACGATTTCAGAGGAAGAATTAGCAGAATTCTTCAAAGAGGAAGAAGGTCTAGAATTAT
ACCGACATTTTTTTGAGCGTTTATTAAAAAATAAGTCCCATGTTCTCTCTCAATTAGAAGAAGAGTTATTAGCGGGTGCC
CAGGAAATTTTTAATGGTGCTGAGGAAACATTTAGTGTTCTTGACAATGCCGATATTCTCTTTCCAGTGATTAGAGACGA
AAATCATCAAGAGGTTGAAATTACTCATGGCAATTTCATTCATTTAATGGAATCTAAAAATCGTAATGTCAGACAGTCTG
CCTATGAGGCACTTTATTCAACTTACCAACAATTCCAACATACCTATGCCAAGACACTACAAACCAATGTGAAAGTACAA
AACTACAAAGCTCGTGTTCATCACTATGACTCAGCCCGTCAGGCAGCTATGTCTGCTAACTTTATTCCTGAAAAGGTCTA
TGATACTCTTATTGAAGAAGTGAACAATCACTTGCCTTTATTGCACCGTTATTTGAAATTGCGACAAGAAGTACTTGGTT
TAGATAGCTTGAAAATGTACGATGTTTACACTCCATTATCAGAAATGACGATGACATTAAGCTATGATGAGGCTTTGGAA
AAAGCTGAAAAAGTTCTTAAAATCTTTGGAACAGAATACAGTGATATTGTGCATCAAGCATTTACTGAACGATGGATAGA
TGTCCAGGTCAAGAAAGGTAAAAGATCAGGAGCTTATTCAGGTGGCTCTTACGATACCAATGCCTTTATGTTATTAAATT
GGCAAGATAATCTAGACAACTTGTTTACCTTAATTCATGAAACAGGTCACAGTTTGCATTCGGCTTTAACACGTAAATAT
CAACCATATGTATATGGTGACTATAGTATCTTCTTAGCAGAAATTGCCTCAACTACAAATGAGAATATTTTAACAGAGGC
ACTCTTAAATGATGTTGAAGACGAAAAACAACGTTTCACTATTTTAAATCATTATTTAGATGGCTTTAGAGGAACCATTT
TCCGTCAGACACAGTTTGCAGAATTTGAACATGCGGTTCATCTTGCTGACCAAAATGGGGAAGTTTTGACCAGTGATTAC
CTCAATCATCTTTATGCTGATCTAAATGAAAAATACTATAATCTTCCGAAAGAAGAAAATAGTTTTATTCAGTACGAATG
GGCAAGGATACCACATTTTTACTATAATTATTATGTTTATCAATATGCTACTGGCTTCGCTGCAGCAAATTATTTAGCTC
ATCAAGTGGTTCATGGTAGCGATGAAGATAAAGAAAATTACCTCAATTATTTAAAATCTGGAAACTCGGATTATCCACTT
AATGTTATCAAAAAAGCAGGAGTGGATATGACAGATGGAACTTATCTAAAAGCAGCTTTTAAAGTTTTTGAAGCTCGACT
GAATGAGCTAGAAGAATTAGTTGAAAAAGGGGTTCATCTTAAGGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.333

99.668

0.691

Multiple sequence alignment