Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM86_RS02465 Genome accession   NZ_LS483407
Coordinates   447318..448127 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13744     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 442318..453127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM86_RS02445 (NCTC13744_00477) - 442759..444006 (+) 1248 WP_111674522.1 AMP-binding protein -
  DQM86_RS02450 (NCTC13744_00478) - 444102..445097 (+) 996 WP_023610409.1 DUF3114 domain-containing protein -
  DQM86_RS02455 (NCTC13744_00479) vicR 445259..445969 (+) 711 WP_002985645.1 response regulator YycF Regulator
  DQM86_RS02460 (NCTC13744_00480) vicK 445962..447314 (+) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM86_RS02465 (NCTC13744_00481) vicX 447318..448127 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQM86_RS02470 (NCTC13744_00482) rnc 448559..449251 (+) 693 WP_002990670.1 ribonuclease III -
  DQM86_RS02475 (NCTC13744_00483) smc 449252..452791 (+) 3540 WP_111674523.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1140452 DQM86_RS02465 WP_002985641.1 447318..448127(+) (vicX) [Streptococcus pyogenes strain NCTC13744]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140452 DQM86_RS02465 WP_002985641.1 447318..448127(+) (vicX) [Streptococcus pyogenes strain NCTC13744]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment