Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQN51_RS07350 Genome accession   NZ_LS483405
Coordinates   1507466..1509271 (-) Length   601 a.a.
NCBI ID   WP_021740938.1    Uniprot ID   U2PFP5
Organism   Levilactobacillus brevis strain NCTC13768     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502466..1514271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN51_RS07325 (NCTC13768_01508) - 1503061..1503960 (-) 900 WP_042516744.1 RluA family pseudouridine synthase -
  DQN51_RS07330 (NCTC13768_01509) - 1503957..1504760 (-) 804 WP_021740943.1 NAD kinase -
  DQN51_RS07335 (NCTC13768_01510) - 1504762..1505421 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  DQN51_RS07340 (NCTC13768_01511) - 1505748..1506386 (+) 639 WP_024526733.1 ClpXP adapter SpxH family protein -
  DQN51_RS07345 (NCTC13768_01512) - 1506549..1507412 (+) 864 WP_021740939.1 DegV family protein -
  DQN51_RS07350 (NCTC13768_01513) pepF 1507466..1509271 (-) 1806 WP_021740938.1 oligoendopeptidase F Regulator
  DQN51_RS07355 (NCTC13768_01514) - 1509338..1510432 (-) 1095 WP_021740937.1 competence protein CoiA -
  DQN51_RS07360 (NCTC13768_01515) trmB 1510559..1511206 (-) 648 WP_021740936.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQN51_RS07365 (NCTC13768_01516) - 1511272..1512063 (-) 792 WP_011668204.1 phosphotransferase family protein -
  DQN51_RS07370 (NCTC13768_01517) - 1512125..1513351 (-) 1227 WP_021740935.1 ABC transporter permease -
  DQN51_RS07375 (NCTC13768_01518) - 1513348..1514082 (-) 735 WP_035464041.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67131.20 Da        Isoelectric Point: 4.8246

>NTDB_id=1140402 DQN51_RS07350 WP_021740938.1 1507466..1509271(-) (pepF) [Levilactobacillus brevis strain NCTC13768]
MKQIPKRSEVPTALTWDLTTIFPDEVAFKTAIAAIKAQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILALPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYIANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1140402 DQN51_RS07350 WP_021740938.1 1507466..1509271(-) (pepF) [Levilactobacillus brevis strain NCTC13768]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAGGTAGC
TTTTAAGACCGCAATTGCCGCGATTAAAGCGCAAACAACGGTTGTGGCCGGCTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCGGCCCAAGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGCTGATTGATAACGACCCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAGCGGGCACATACGCTGTCAGTGGCGGAGGAAAAATTGTTAGCG
GGGGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTATAGTGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAGGCCGGCAACGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTGGCGAGTGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCAATGAGTCGCAATAATGTGCCAGCAGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGATCATTTAGACTCGCTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGCCTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTTTTGGGACCGGATTACATTGCCAATGTTCAAAAGATGTTTGATGGCCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGTCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCCACGA
CGTTATCGCAACGGATTTTGAGTGGTGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGCAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGCATGAATTAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2PFP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.831

98.17

0.489

Multiple sequence alignment