Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQN23_RS08205 Genome accession   NZ_LS483403
Coordinates   1636608..1637969 (-) Length   453 a.a.
NCBI ID   WP_111713020.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1631608..1642969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS08180 (NCTC13774_01717) - 1631654..1632820 (-) 1167 WP_111713017.1 MFS transporter -
  DQN23_RS08185 (NCTC13774_01718) gltX 1632926..1634383 (-) 1458 WP_111713018.1 glutamate--tRNA ligase -
  DQN23_RS08190 (NCTC13774_01719) - 1634506..1635003 (-) 498 WP_058832849.1 LURP-one-related/scramblase family protein -
  DQN23_RS08195 (NCTC13774_01720) - 1635042..1635968 (-) 927 WP_111713019.1 aldo/keto reductase family oxidoreductase -
  DQN23_RS08200 (NCTC13774_01721) - 1635995..1636492 (-) 498 WP_020917533.1 carbonic anhydrase -
  DQN23_RS08205 (NCTC13774_01722) radA 1636608..1637969 (-) 1362 WP_111713020.1 DNA repair protein RadA Machinery gene
  DQN23_RS08210 (NCTC13774_01723) - 1638005..1638451 (-) 447 WP_020917535.1 dUTP diphosphatase -
  DQN23_RS08215 (NCTC13774_01724) - 1638478..1639245 (-) 768 WP_058814289.1 epoxyqueuosine reductase QueH -
  DQN23_RS08220 (NCTC13774_01725) - 1639445..1640461 (+) 1017 WP_111713021.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQN23_RS08225 (NCTC13774_01726) galU 1640522..1641442 (+) 921 WP_373104342.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DQN23_RS08230 (NCTC13774_01727) - 1641504..1642175 (-) 672 WP_020917539.1 rhomboid family intramembrane serine protease -
  DQN23_RS08235 (NCTC13774_01728) - 1642172..1642699 (-) 528 WP_111713022.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49552.84 Da        Isoelectric Point: 5.8259

>NTDB_id=1140368 DQN23_RS08205 WP_111713020.1 1636608..1637969(-) (radA) [Streptococcus lutetiensis strain NCTC13774]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESSEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTSELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYSPKNSLAGIDIPETIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1140368 DQN23_RS08205 WP_111713020.1 1636608..1637969(-) (radA) [Streptococcus lutetiensis strain NCTC13774]
ATCGCTAAGAAGAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAGTATTTAGGGCGTTGCCCAAACTG
TTCGTCATGGACGTCATTTGTTGAAGAAGTTGAGGTGCAAGAGGTTAAAAATGCGCGTGTCAGCTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTAAAAGATGTGAGCTCGATTAACTACTCACGCACGAAGACAGACATGGATGAATTTAACCGTGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACCCTGCTTTTGCA
AGTATCGATTCAGCTTGCTGACAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCATCTGAGCAGATTAAACTACGTA
GTGAACGTCTTGGCGATATTGACAATGAATTTTACCTTTATGCTGAGACTAATATGCAAGCCATTCGTGCGCAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAAACCATTATGAGCCCTGACATTTCTGGGGTTCAAGGGTCAGT
ATCACAAGTGCGTGAAGTGACATCGGAGCTCATGCAACTAGCTAAGACTAATAATATTGCAACCTTTATCGTTGGTCATG
TGACTAAGGAGGGGCAGCTTGCTGGGCCGCGTATGCTTGAGCATATGGTGGATACAGTACTCTATTTTGAAGGGGAACGT
CACCATACTTTCCGTATTTTGCGTGCCGTGAAAAATCGTTTTGGCTCAACCAACGAAATTGGCATTTTTGAAATGCAATC
AGGCGGGCTTGTTGAAGTACTTAATCCTAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCGACTGGCTCAGCTATCG
TGGTTACTATGGAAGGAAGTCGTCCAATTTTAGCAGAAGTCCAAGCTTTGGTAACACCAACGGTTTTTGGAAATGCCAAA
CGCACAACGACAGGTCTTGATTTTAACCGAGTCAGCTTGATTATGGCGGTGCTTGAAAAACGTTGTGGGCTTTTGTTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTGAAACTTGATGAACCAGCCATTGACTTGGCAGTTGCGGTAGCGA
TTGCGTCAAGCTATAAAGAGAAGCCAACCAATCCCCAAGAAGCTTTTATTGGTGAAATTGGTTTGACGGGTGAGATTCGT
CGTGTCACTCGTATTGAACAACGTATCAATGAAGCGGCAAAACTTGGCTTTACCAAAGTTTACTCGCCAAAGAATTCTTT
GGCTGGTATTGATATTCCAGAAACGATTGAAGTGGTTGGGGTAACAACCGTCGGTGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.053

99.779

0.879
  radA Streptococcus pneumoniae D39

88.053

99.779

0.879
  radA Streptococcus pneumoniae R6

88.053

99.779

0.879
  radA Streptococcus pneumoniae TIGR4

88.053

99.779

0.879
  radA Streptococcus mitis SK321

88.053

99.779

0.879
  radA Streptococcus mitis NCTC 12261

87.832

99.779

0.876
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

100

0.618

Multiple sequence alignment