Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQN23_RS01875 Genome accession   NZ_LS483403
Coordinates   335153..335878 (+) Length   241 a.a.
NCBI ID   WP_111712638.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 330153..340878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS01845 (NCTC13774_00374) - 330567..331988 (+) 1422 WP_111712635.1 NCS2 family permease -
  DQN23_RS01850 (NCTC13774_00375) tsaE 332163..332606 (+) 444 WP_058813650.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQN23_RS01855 (NCTC13774_00376) - 332599..333111 (+) 513 WP_111698233.1 GNAT family N-acetyltransferase -
  DQN23_RS01860 (NCTC13774_00377) brpA 333122..334282 (+) 1161 WP_111712636.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQN23_RS01865 (NCTC13774_00378) - 334368..334673 (-) 306 WP_058833229.1 hypothetical protein -
  DQN23_RS01870 (NCTC13774_00379) - 334670..335089 (-) 420 WP_111712637.1 HIT family protein -
  DQN23_RS01875 (NCTC13774_00380) pptA 335153..335878 (+) 726 WP_111712638.1 ABC transporter ATP-binding protein Regulator
  DQN23_RS01880 (NCTC13774_00381) - 335881..336915 (+) 1035 WP_111712639.1 ABC transporter permease -
  DQN23_RS01885 (NCTC13774_00382) ccrZ 336968..337789 (+) 822 WP_043894957.1 cell cycle regulator CcrZ -
  DQN23_RS01890 (NCTC13774_00383) trmB 337789..338427 (+) 639 WP_111712640.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQN23_RS01900 (NCTC13774_00384) - 338792..339823 (+) 1032 WP_111712641.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26744.07 Da        Isoelectric Point: 4.6835

>NTDB_id=1140337 DQN23_RS01875 WP_111712638.1 335153..335878(+) (pptA) [Streptococcus lutetiensis strain NCTC13774]
MLKIENVTGGYINIPVLKNISFEVGDGELVGLIGLNGAGKSTTINEVIGLLTPYQGKITLDGLTLADNQAEYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDLDFDQAMARAKELLKLFRLSDKLEWFPINFSKGMKQKVMIVCAFMIDPYLFIVDEPF
LGLDPLAISDLTDLLAQEKAKGKAILMSTHVLDAAEKMCDRFVILHHGQVRAMGNLAELRQAFGQEDASLNDIYIASTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1140337 DQN23_RS01875 WP_111712638.1 335153..335878(+) (pptA) [Streptococcus lutetiensis strain NCTC13774]
ATGTTAAAAATTGAAAATGTCACAGGTGGATACATTAATATCCCTGTTTTAAAAAATATTTCTTTTGAAGTTGGTGACGG
TGAGTTGGTCGGCTTGATTGGGCTAAATGGTGCTGGGAAGTCAACGACGATTAATGAAGTTATCGGACTTTTGACGCCTT
ATCAAGGAAAGATTACGCTTGACGGCTTGACTTTGGCTGATAACCAAGCAGAGTATCGCAAAAAGATTGGCTTTATTCCT
GAAACGCCAAGCTTGTATGAAGAGTTAACTTTACGTGAGCATTTAGAGACGGTTGCTATGGCTTATGACCTTGATTTTGA
TCAAGCGATGGCGCGTGCTAAGGAATTGCTAAAACTTTTCCGTCTGTCTGATAAGCTTGAATGGTTCCCGATTAATTTTT
CAAAAGGGATGAAGCAAAAGGTTATGATTGTGTGCGCCTTTATGATTGATCCTTATTTGTTTATCGTTGATGAGCCATTT
TTGGGACTAGATCCTTTGGCGATTTCTGATTTAACGGATTTGCTAGCGCAGGAAAAAGCAAAAGGCAAAGCTATTTTGAT
GTCAACACACGTGTTAGATGCTGCTGAAAAAATGTGTGATCGATTTGTGATTTTGCATCATGGTCAAGTGCGTGCAATGG
GAAATCTAGCTGAATTGCGTCAAGCTTTTGGTCAAGAAGATGCTAGTTTGAACGATATTTACATAGCTTCAACTAAAGAG
GGATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

76.987

99.17

0.763
  pptA Streptococcus thermophilus LMD-9

75.732

99.17

0.751

Multiple sequence alignment