Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N506_RS08285 Genome accession   NZ_CP006803
Coordinates   1720969..1722771 (-) Length   600 a.a.
NCBI ID   WP_095670317.1    Uniprot ID   -
Organism   Lactobacillus gasseri DSM 14869     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715969..1727771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N506_RS08280 (N506_1709) - 1716442..1720812 (+) 4371 WP_095670316.1 N506_1709 family sortase-dependent adhesin -
  N506_RS08285 (N506_1710) pepF 1720969..1722771 (-) 1803 WP_095670317.1 oligoendopeptidase F Regulator
  N506_RS08290 (N506_1711) - 1722935..1724059 (+) 1125 WP_095670318.1 LCP family protein -
  N506_RS08295 (N506_1713) - 1724164..1724433 (-) 270 WP_095670319.1 hypothetical protein -
  N506_RS08300 (N506_1714) - 1724657..1725031 (+) 375 WP_095670320.1 hypothetical protein -
  N506_RS08305 (N506_1715) - 1725058..1726605 (+) 1548 WP_095670321.1 ABC-F family ATP-binding cassette domain-containing protein -
  N506_RS08310 (N506_1716) - 1726628..1727410 (+) 783 WP_003656143.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68729.76 Da        Isoelectric Point: 4.7766

>NTDB_id=114026 N506_RS08285 WP_095670317.1 1720969..1722771(-) (pepF) [Lactobacillus gasseri DSM 14869]
MALPTRNEVSDELKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKELYEGITEILAINRRLEKVYVYATMSS
DVDTSNTHYLGFVVKAQSLANQMSAAIAFVDPEILSIPAKTLTKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFKNSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVSLRKKILGLKDLQMYDMYVPLTGKPVLSYNFNEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVESQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGDLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTDKERDAYINFLKSGSSDY
PTEIMKRAGVDMTKADYLRDTFDTFEKRLNEFEKIVDELN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=114026 N506_RS08285 WP_095670317.1 1720969..1722771(-) (pepF) [Lactobacillus gasseri DSM 14869]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGAGCTTAAGTGGGACTTAAGTCGTGTTTTTAAAAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCGCAAGAAATCAAGAACTTAAGCAAATTCAAGGGAACACTTGCCAAATCTGGTAAAG
AGCTCTACGAAGGAATTACAGAAATTTTAGCTATAAATCGACGCTTAGAAAAAGTATATGTTTACGCCACGATGTCAAGC
GACGTTGACACGAGCAATACTCATTACCTCGGTTTTGTTGTCAAAGCTCAAAGCTTAGCTAATCAAATGAGTGCTGCGAT
TGCTTTTGTCGATCCAGAAATCTTGTCTATTCCAGCAAAAACACTTACTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTACCGGCATCGCCTTGAACAAATTACCCAAAAGCGTCCGCATACTCTACCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGACGCAATGGGAACGTCTGCTAACACTTTTAATGTCTTAACCAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGCTTATATTCGCTTTTAATTCAATCTCAAGACCGCAATGTTCGCAAAA
ACGCCTTTGACGTGATGTACGCAAGCTACGGACAGTTTAAAAATAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAGGCT
CACAATTTTAATGCTCGAGTACATAAATATAATTCAGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTTCCAACAGCTGT
TTACGATACCTTAATCAAGGAAGTAAATAGCCACCTCGACTTACTTCACCGCTACGTTTCATTAAGAAAGAAAATTTTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTGCCATTAACTGGGAAGCCCGTTCTTTCTTATAACTTTAACGAAGCA
AAAGAAGAAGCTAGAAAGGCTTTAGCACCATTAGGAGAGGACTATTTAAAGCACGTTGATTACATTTTTAATAACCGCGT
AATTGACGTAGTTGAAAGTCAAAATAAAGTAACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTCC
TTAACTGGGAAGATAACCTTGATTCACTCTACACACTAGTTCATGAGACTGGTCACTCTGTCCACTCTTGGTATACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACCACTAATGAGAACATCTTGAC
TGAATATTTCTTAGATAAGATTACTGATCCTAAAACTCGAGCATTTGTCTTGAACCATTATCTTGATTCATTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCAGAATTTGAACAATTTATTCATGAAGCTGATGCTAATGGCCAACCATTAACAGCC
GATGTCCTGGATGAATTTTATGGCGACTTAAACCAAAGATATTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCTC
TTGCTAATAAAGTTGTTCACGGCACTGACAAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGTTCTTCAGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATACTTTTGATACCTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99

0.512

Multiple sequence alignment