Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DQM80_RS09345 Genome accession   NZ_LS483399
Coordinates   1821356..1822132 (+) Length   258 a.a.
NCBI ID   WP_331852212.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8227     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1816356..1827132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM80_RS09325 (NCTC8227_01849) - 1818184..1818958 (-) 775 Protein_1753 IS30 family transposase -
  DQM80_RS09335 (NCTC8227_01852) rlmH 1819353..1819832 (-) 480 WP_111702357.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM80_RS09340 (NCTC8227_01853) htrA 1820044..1821267 (+) 1224 WP_002991468.1 S1C family serine protease Regulator
  DQM80_RS09345 (NCTC8227_01854) spo0J 1821356..1822132 (+) 777 WP_331852212.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29028.86 Da        Isoelectric Point: 10.2949

>NTDB_id=1140256 DQM80_RS09345 WP_331852212.1 1821356..1822132(+) (spo0J) [Streptococcus pyogenes strain NCTC8227]
MTKELLIDLPIEDIVTNPYQPRIQFNQKELQDLATSIKSNGLIQPIIVRKSDIFGYELVAGERRLKASKMAGLKKIPAII
KKISTLESMQQAIVENLQRSNLNAIEEAKAYQLLVEKKHMTHDEIAKYMGKSRPYISNTLRLLQLPAPIIKAIEEGKISA
GHARALLTLSDDKQQLYLTHKIQNEGLSVRQIEQLVTSTPSSKLSKKTKNIFATSLEKQLAKSLGLSVNMKLTANHSGYL
QISFSNDDELNRIINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=1140256 DQM80_RS09345 WP_331852212.1 1821356..1822132(+) (spo0J) [Streptococcus pyogenes strain NCTC8227]
ATGACAAAAGAATTATTGATAGACCTACCAATTGAAGATATTGTTACAAATCCCTATCAGCCAAGGATACAATTTAATCA
AAAAGAACTCCAAGACCTAGCAACTTCTATTAAATCAAACGGCCTCATTCAACCTATTATTGTTCGAAAATCTGACATTT
TTGGCTATGAGTTAGTTGCTGGAGAACGACGACTTAAAGCTTCAAAAATGGCTGGTCTAAAAAAAATTCCAGCTATCATC
AAGAAGATCTCTACACTCGAGAGCATGCAACAAGCTATAGTTGAAAATTTACAACGTTCTAACCTTAACGCTATCGAAGA
AGCTAAAGCCTATCAGTTATTGGTTGAAAAAAAACACATGACTCACGATGAGATTGCTAAATATATGGGAAAATCAAGAC
CTTATATTAGCAATACCTTACGTCTGTTACAACTCCCAGCACCTATCATTAAAGCAATTGAAGAAGGAAAAATTAGTGCG
GGACACGCGCGTGCTCTTTTAACTTTGAGTGATGATAAGCAACAACTGTACCTCACTCATAAAATACAAAATGAAGGCCT
AAGTGTTAGGCAAATTGAGCAACTGGTTACTTCTACCCCAAGTTCGAAGCTATCTAAAAAAACTAAAAATATTTTTGCCA
CTTCTTTAGAGAAACAATTGGCTAAATCATTGGGACTCTCTGTCAATATGAAGCTGACAGCAAACCATAGTGGGTACCTT
CAGATATCTTTTTCCAATGATGATGAATTAAACAGAATTATCAACAAGCTAAAGTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-197)

ParB/Sulfiredoxin domain (ParB_N)

(9-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

59.533

99.612

0.593

Multiple sequence alignment