Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   DQM80_RS07280 Genome accession   NZ_LS483399
Coordinates   1394770..1395495 (-) Length   241 a.a.
NCBI ID   WP_002983379.1    Uniprot ID   A0A4U7HHL6
Organism   Streptococcus pyogenes strain NCTC8227     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1389770..1400495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM80_RS07245 (NCTC8227_01452) rnpM 1389799..1390095 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQM80_RS07250 (NCTC8227_01453) nusA 1390111..1391268 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  DQM80_RS07255 (NCTC8227_01454) rimP 1391443..1391979 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQM80_RS07265 (NCTC8227_01456) trmB 1392243..1392878 (-) 636 WP_011184863.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM80_RS07270 (NCTC8227_01457) ccrZ 1392878..1393669 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQM80_RS07275 (NCTC8227_01458) - 1393733..1394767 (-) 1035 WP_111702249.1 ABC transporter permease -
  DQM80_RS07280 (NCTC8227_01459) pptA 1394770..1395495 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQM80_RS07285 (NCTC8227_01460) - 1395567..1395986 (+) 420 WP_002983376.1 HIT family protein -
  DQM80_RS07290 (NCTC8227_01461) - 1395983..1396339 (+) 357 WP_002988657.1 hypothetical protein -
  DQM80_RS07295 (NCTC8227_01462) brpA 1396450..1397733 (-) 1284 WP_011184864.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM80_RS07300 (NCTC8227_01463) - 1397742..1398266 (-) 525 WP_011184865.1 GNAT family N-acetyltransferase -
  DQM80_RS07305 (NCTC8227_01464) tsaE 1398241..1398702 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM80_RS07310 (NCTC8227_01465) - 1398856..1400316 (-) 1461 WP_002988645.1 NCS2 family permease -

Sequence


Protein


Download         Length: 241 a.a.        Molecular weight: 26678.75 Da        Isoelectric Point: 4.5624

>NTDB_id=1140246 DQM80_RS07280 WP_002983379.1 1394770..1395495(-) (pptA) [Streptococcus pyogenes strain NCTC8227]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1140246 DQM80_RS07280 WP_002983379.1 1394770..1395495(-) (pptA) [Streptococcus pyogenes strain NCTC8227]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCTTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGCTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains


Predicted by InterproScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4U7HHL6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722

  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714


Multiple sequence alignment