Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM80_RS02220 Genome accession   NZ_LS483399
Coordinates   413006..413815 (+) Length   269 a.a.
NCBI ID   WP_111701871.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8227     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 408006..418815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM80_RS02200 (NCTC8227_00433) - 408440..409695 (+) 1256 Protein_386 AMP-binding protein -
  DQM80_RS02205 (NCTC8227_00434) - 409751..410785 (+) 1035 WP_011184290.1 DUF3114 domain-containing protein -
  DQM80_RS02210 (NCTC8227_00435) vicR 410947..411657 (+) 711 WP_002985645.1 response regulator YycF Regulator
  DQM80_RS02215 (NCTC8227_00436) vicK 411650..413002 (+) 1353 WP_002990673.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM80_RS02220 (NCTC8227_00437) vicX 413006..413815 (+) 810 WP_111701871.1 MBL fold metallo-hydrolase Regulator
  DQM80_RS02225 (NCTC8227_00438) rnc 414258..414950 (+) 693 WP_002985639.1 ribonuclease III -
  DQM80_RS02230 (NCTC8227_00439) smc 414951..418490 (+) 3540 WP_011889080.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30037.17 Da        Isoelectric Point: 5.7423

>NTDB_id=1140226 DQM80_RS02220 WP_111701871.1 413006..413815(+) (vicX) [Streptococcus pyogenes strain NCTC8227]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHGTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140226 DQM80_RS02220 WP_111701871.1 413006..413815(+) (vicX) [Streptococcus pyogenes strain NCTC8227]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTTAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCACATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGGTACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.465

100

0.755

Multiple sequence alignment