Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N506_RS05635 Genome accession   NZ_CP006803
Coordinates   1137589..1138968 (-) Length   459 a.a.
NCBI ID   WP_003651325.1    Uniprot ID   A0AB33ZVU7
Organism   Lactobacillus gasseri DSM 14869     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132589..1143968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N506_RS05615 (N506_1158) rlmB 1133324..1134079 (-) 756 WP_003647790.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  N506_RS05620 (N506_1159) - 1134066..1134509 (-) 444 WP_003647791.1 Mini-ribonuclease 3 -
  N506_RS05625 (N506_1160) cysS 1134502..1135914 (-) 1413 WP_186433563.1 cysteine--tRNA ligase -
  N506_RS05630 (N506_1161) gltX 1136008..1137507 (-) 1500 WP_049150617.1 glutamate--tRNA ligase -
  N506_RS05635 (N506_1162) radA 1137589..1138968 (-) 1380 WP_003651325.1 DNA repair protein RadA Machinery gene
  N506_RS05640 (N506_1163) - 1138968..1139519 (-) 552 WP_095670021.1 dUTP diphosphatase -
  N506_RS05645 (N506_1164) pepC 1139713..1141062 (+) 1350 WP_095670022.1 aminopeptidase C -
  N506_RS05650 (N506_1165) - 1141127..1142062 (-) 936 WP_095670023.1 AAA family ATPase -
  N506_RS05655 (N506_1166) - 1142172..1142849 (-) 678 WP_003651317.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  N506_RS05660 (N506_1167) - 1142868..1143053 (-) 186 WP_095670024.1 hypothetical protein -
  N506_RS05665 (N506_1168) - 1143055..1143312 (-) 258 WP_003651312.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50125.74 Da        Isoelectric Point: 7.6588

>NTDB_id=114019 N506_RS05635 WP_003651325.1 1137589..1138968(-) (radA) [Lactobacillus gasseri DSM 14869]
MAKVKTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKLNEVKAEKEKRIVTPFE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALAKEHSVLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNI
REQIDEIKPDFLVIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPNSTGSAVVVSLEGTRPLLADIQALVTPTA
FGYAKRTTSGLDFNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISATDCFVGEVGL
TGEIRRVNQIEARVKEAAKVGFKRIFIPKHNLTTELKNNSEIEVIGVASLPQALKLVFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=114019 N506_RS05635 WP_003651325.1 1137589..1138968(-) (radA) [Lactobacillus gasseri DSM 14869]
ATGGCAAAAGTTAAAACACGTTACAAGTGTCGCAATTGTGGTTATATTTCAGCTTCTTATTTAGGTAGATGCCCTAACTG
CGGTGCTTGGAATCAATTTGAAGAAGAAACTCAAGAAGTAAAAAAAGTATCAACTAAGGCAACTGCCAGCCGTTTAATGA
CTAAAATTGGAAACAATGATCCAGTAAAATTAAATGAAGTAAAAGCTGAAAAAGAAAAAAGAATTGTAACGCCGTTTGAA
GAATTAAATCGAGTTCTAGGGGGCGGAATAGTTCCAGGTTCTTTAGTTTTAATTGGTGGAGATCCTGGAATTGGCAAATC
AACTTTGATGCTCCAAATTACCGGTGCTTTAGCTAAAGAGCATAGCGTTTTATATGTTTCAGGGGAAGAGTCGGCTAGTC
AGATAAAAATGCGAGCTGACCGGCTAGGTGTAAGCAACAGTGGAATTTTGCTTTATCCTGAAACCAATATGCAGAATATT
CGTGAACAGATTGATGAGATTAAGCCAGATTTTTTAGTAATCGATTCTATTCAAACAATGAATGAGCCATCTCTTGATTC
GATGGTAGGATCTGCTTCTCAAGTTCGAGAAGTTACGAGTGAGTTAATGAAAATTGCTAAGAATGATCAGATTACTACTT
TTGTTATTGGACATGTGACTAAAGAAGGAGCTATTGCTGGTCCTAAGATTATGGAACATATGGTTGACACTGTTCTTTAC
TTTGAGGGGGATGGCCACCATTCATATCGAATTTTAAGATCTGTTAAAAATCGTTTTGGGGCAGCTAATGAAATTGGCAT
GTTTGAAATGAAAAATGAAGGACTAACAGAAGTGAATAATCCTTCAGCAATTTTCTTAGACGAACGCTTACCCAATTCTA
CAGGGTCAGCAGTTGTAGTTTCGCTTGAAGGAACAAGGCCACTTTTAGCAGATATTCAGGCCTTGGTAACTCCAACTGCC
TTTGGCTATGCTAAAAGAACTACATCGGGGTTAGATTTCAATCGTGTAGCCTTATTATTAGCGGTTTTAGAAAAACGTGG
TAACCTAATGTTGCAAAATCAAGATGCATTTTTAACGGCAACAGGTGGAATTAAGTTAAATGAGCCAGCGATTGATTTGG
CAATCTGTATGGCTGTAGCTTCTAGTTATAAAAATAAAGAAATTTCTGCTACTGATTGTTTTGTAGGAGAGGTTGGTTTA
ACTGGTGAAATTAGAAGAGTTAATCAAATTGAAGCTAGAGTTAAAGAAGCTGCTAAGGTAGGATTTAAGCGAATTTTTAT
CCCTAAACATAATTTAACTACTGAGCTTAAGAATAATTCTGAAATTGAAGTAATTGGTGTAGCAAGTCTGCCACAAGCTT
TAAAACTGGTTTTTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

60.044

99.782

0.599
  radA Streptococcus mitis SK321

60.044

99.782

0.599
  radA Streptococcus pneumoniae Rx1

60.044

99.782

0.599
  radA Streptococcus pneumoniae D39

60.044

99.782

0.599
  radA Streptococcus pneumoniae R6

60.044

99.782

0.599
  radA Streptococcus pneumoniae TIGR4

60.044

99.782

0.599
  radA Bacillus subtilis subsp. subtilis str. 168

55.921

99.346

0.556

Multiple sequence alignment