Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   XFC3_RS07000 Genome accession   NZ_CP009829
Coordinates   1509796..1510485 (-) Length   229 a.a.
NCBI ID   WP_010894039.1    Uniprot ID   Q9PD39
Organism   Xylella fastidiosa strain 3124     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504796..1515485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFC3_RS06985 (XFC3_07000) - 1506634..1507095 (-) 462 WP_010894046.1 glycine zipper 2TM domain-containing protein -
  XFC3_RS06990 (XFC3_07005) - 1507865..1508608 (+) 744 Protein_1381 tRNA threonylcarbamoyladenosine dehydratase -
  XFC3_RS06995 (XFC3_13075) - 1509003..1509185 (+) 183 WP_162009299.1 hypothetical protein -
  XFC3_RS07000 (XFC3_07015) crp 1509796..1510485 (-) 690 WP_010894039.1 cAMP-activated global transcriptional regulator CRP Regulator
  XFC3_RS07005 (XFC3_07020) speD 1510628..1511422 (+) 795 WP_004083667.1 adenosylmethionine decarboxylase -
  XFC3_RS07010 (XFC3_07025) coq7 1511590..1512243 (-) 654 WP_010894038.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  XFC3_RS07015 (XFC3_07030) rplM 1512464..1512892 (+) 429 WP_010894037.1 50S ribosomal protein L13 -
  XFC3_RS07020 (XFC3_07035) rpsI 1512897..1513289 (+) 393 WP_023906680.1 30S ribosomal protein S9 -
  XFC3_RS07025 (XFC3_07040) - 1513508..1514797 (-) 1290 WP_010894035.1 citrate synthase -
  XFC3_RS07030 (XFC3_07045) - 1515025..1515267 (-) 243 WP_004083672.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25555.39 Da        Isoelectric Point: 9.3942

>NTDB_id=114019 XFC3_RS07000 WP_010894039.1 1509796..1510485(-) (crp) [Xylella fastidiosa strain 3124]
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHCHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEEDHRELILGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=114019 XFC3_RS07000 WP_010894039.1 1509796..1510485(-) (crp) [Xylella fastidiosa strain 3124]
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACTGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGATCCTGCTGGAACGC
TTTACTATGTTATCAGCGGGTCGATCAGCATCATTGCCGAGGAAGAAGATCATCGTGAGCTGATTCTTGGCTATTTCGGA
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGCGAAGTCATCTTACGTACCCGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCCTGCACCAACTGTTGCAAGGCAGTTTGGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGCATGCAGTTATCTAAGCGTTTATTGCTTACCACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTGGCGCGTCTAGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GACTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-122)

Bacterial regulatory proteins, crp family (Crp)

(185-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PD39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

45.894

90.393

0.415
  crp Vibrio cholerae strain A1552

44.444

90.393

0.402
  crp Acinetobacter baumannii D1279779

44.608

89.083

0.397

Multiple sequence alignment