Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM95_RS09570 Genome accession   NZ_LS483397
Coordinates   1888766..1889479 (+) Length   237 a.a.
NCBI ID   WP_037593125.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883766..1894479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS09560 (NCTC3858_01943) treC 1884862..1886493 (-) 1632 WP_037593127.1 alpha,alpha-phosphotrehalase -
  DQM95_RS09565 (NCTC3858_01944) treP 1886561..1888546 (-) 1986 WP_037593126.1 PTS system trehalose-specific EIIBC component -
  DQM95_RS09570 (NCTC3858_01945) treR 1888766..1889479 (+) 714 WP_037593125.1 trehalose operon repressor Regulator
  DQM95_RS09575 (NCTC3858_01946) - 1889498..1889824 (-) 327 WP_037593124.1 helix-turn-helix domain-containing protein -
  DQM95_RS09580 (NCTC3858_01947) - 1890027..1890887 (+) 861 WP_037593123.1 VOC family protein -
  DQM95_RS09585 (NCTC3858_01948) yaaA 1890940..1891671 (+) 732 WP_015912058.1 peroxide stress protein YaaA -
  DQM95_RS09590 (NCTC3858_01949) nrdG 1891786..1892400 (-) 615 WP_037593122.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM95_RS09595 (NCTC3858_01950) - 1892405..1892908 (-) 504 WP_015912060.1 GNAT family N-acetyltransferase -
  DQM95_RS09600 (NCTC3858_01951) - 1892877..1893857 (-) 981 WP_037593121.1 Gfo/Idh/MocA family protein -
  DQM95_RS10070 (NCTC3858_01952) - 1893883..1894032 (-) 150 WP_170123125.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27671.92 Da        Isoelectric Point: 9.2840

>NTDB_id=1140186 DQM95_RS09570 WP_037593125.1 1888766..1889479(+) (treR) [Streptococcus uberis strain NCTC3858]
MKKYEQIYKDLESKIAKEIYKIDDFLPTEMALSEEYQASRDTIRKALTLLTKSGLVKKRQGRGTQVIKHHQILFPISELT
SYQELVTFFNMDSKTNVIAIDKLIVDNDTSKLTGFQVNDIIWRVTRQRVVDGVASVLDIDYLSKKLIPTITREIAEHSLY
HYLEKDLHLDIDFALKEVTIDQVNEKDKILLDLGSDKHVVSVKSKVYLSTNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1140186 DQM95_RS09570 WP_037593125.1 1888766..1889479(+) (treR) [Streptococcus uberis strain NCTC3858]
ATGAAGAAATATGAACAAATTTATAAAGATTTAGAATCTAAAATCGCCAAAGAAATCTACAAAATTGACGACTTCTTACC
CACAGAAATGGCCTTAAGTGAAGAGTACCAGGCTAGTCGTGACACTATTCGAAAAGCCCTCACTCTCCTAACAAAATCCG
GACTGGTCAAAAAACGACAAGGACGGGGTACACAAGTTATCAAGCATCATCAAATTCTTTTCCCAATTTCAGAACTGACC
AGTTACCAAGAACTCGTTACTTTTTTTAATATGGATTCCAAAACGAACGTGATTGCCATCGATAAATTAATTGTGGATAA
TGATACCTCAAAATTAACAGGTTTTCAGGTTAATGACATTATTTGGAGGGTCACACGACAAAGAGTTGTCGATGGTGTCG
CATCCGTCCTAGACATCGATTATCTCAGTAAAAAACTAATCCCTACAATAACTCGTGAAATTGCTGAACACTCCTTGTAT
CACTATCTCGAAAAAGATCTTCATCTAGACATTGACTTTGCACTGAAAGAAGTAACCATTGATCAAGTTAACGAGAAAGA
TAAAATACTTCTAGACTTAGGATCAGATAAACATGTTGTCTCTGTCAAATCCAAGGTTTATCTCTCAACTAATGAACAAT
TTCAATTTACTGAAAGTCGTCATAAACTGGAAAAATTCAAATTTGTAGATTTTGCACGAAGAAAACCAAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(92-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.521

98.734

0.667

Multiple sequence alignment