Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM95_RS06620 Genome accession   NZ_LS483397
Coordinates   1274982..1276790 (-) Length   602 a.a.
NCBI ID   WP_037591814.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269982..1281790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS06600 (NCTC3858_01346) prsA 1271081..1272025 (-) 945 WP_037591820.1 peptidylprolyl isomerase PrsA -
  DQM95_RS06605 (NCTC3858_01347) - 1272088..1272795 (-) 708 WP_037591818.1 O-methyltransferase -
  DQM95_RS06610 (NCTC3858_01348) - 1272935..1274164 (-) 1230 WP_037591817.1 OFA family MFS transporter -
  DQM95_RS06615 (NCTC3858_01349) - 1274289..1274930 (-) 642 WP_037591816.1 HAD family phosphatase -
  DQM95_RS06620 (NCTC3858_01350) pepF 1274982..1276790 (-) 1809 WP_037591814.1 oligoendopeptidase F Regulator
  DQM95_RS06625 (NCTC3858_01351) - 1276807..1277751 (-) 945 WP_037591812.1 competence protein CoiA -
  DQM95_RS06630 (NCTC3858_01352) - 1277827..1278972 (-) 1146 WP_037591810.1 MFS transporter -
  DQM95_RS06635 - 1279058..1279773 (-) 716 Protein_1249 pseudouridine synthase -
  DQM95_RS06640 (NCTC3858_01355) nagB 1279839..1280543 (-) 705 WP_037591809.1 glucosamine-6-phosphate deaminase -
  DQM95_RS06645 (NCTC3858_01356) queA 1280724..1281752 (+) 1029 WP_012658715.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 70208.34 Da        Isoelectric Point: 4.7851

>NTDB_id=1140170 DQM95_RS06620 WP_037591814.1 1274982..1276790(-) (pepF) [Streptococcus uberis strain NCTC3858]
MTDQASQIEEKYTWDLSTIYHSDEDWETDFEQVSKEVEAAKSFAGHLLDSSQQLLEITEVELNLARRIEKLYVYAHMKND
QDTRVSKYQAYYAKASGLYALFSEVFSFYEPELMTISEEELAEFFKEEEGLELYRHFFERLLKNKSHVLSQLEEELLAGA
QEIFNGAEETFSVLDNADILFPVIRDENHQEVEITHGNFIHLMESKNRNVRKSAYEALYSTYQQFQHTYAKTLQTNVKVQ
NYKARVHHYDSARQAAMSANFIPEKVYDTLIEEVNNHLPLLHRYLKLRQEVLGLDSLKMYDVYTPLSEMTMTLSYDEALE
KAEKVLQIFGTEYSDIVHQAFTERWIDVQVKKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLIHETGHSLHSALTRKY
QPYVYGDYSIFLAEIASTTNENILTEALLNDVEDEKQRFTILNHYLDGFRGTIFRQTQFAEFEHAVHLADQNGEVLTSDY
LNHLYADLNEKYYNLPKKENSFIQYEWARIPHFYYNYYVYQYATGFAAANYLAHQVVHGSDEDKENYLNYLKSGNSDYPL
NVIKKAGVDMTDGTYLKAAFKVFEARLNELEELVAKGVHLKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1140170 DQM95_RS06620 WP_037591814.1 1274982..1276790(-) (pepF) [Streptococcus uberis strain NCTC3858]
ATGACAGATCAAGCAAGTCAAATAGAAGAAAAGTATACATGGGATTTAAGTACCATTTATCACAGTGATGAAGACTGGGA
AACTGATTTTGAACAAGTAAGTAAGGAGGTGGAAGCAGCAAAAAGTTTCGCTGGACACCTACTGGATTCAAGTCAACAAT
TATTAGAAATTACTGAAGTAGAACTGAATTTGGCAAGACGTATTGAAAAACTTTATGTTTATGCTCATATGAAAAATGAT
CAGGATACAAGAGTATCAAAATACCAAGCCTATTATGCTAAGGCATCTGGGCTTTATGCTTTATTTAGTGAAGTTTTCTC
ATTTTATGAGCCTGAATTGATGACGATTTCAGAGGAAGAATTAGCAGAATTCTTCAAAGAGGAAGAAGGTCTAGAATTAT
ACCGACATTTTTTTGAGCGTTTATTAAAAAATAAGTCCCATGTTCTCTCTCAATTAGAAGAAGAGTTATTAGCGGGTGCC
CAGGAAATTTTTAATGGTGCTGAGGAAACATTTAGTGTTCTTGACAATGCCGATATTCTCTTTCCAGTGATTAGAGACGA
AAATCATCAAGAGGTTGAAATTACTCATGGCAATTTCATTCATTTAATGGAATCTAAAAATCGTAATGTCAGAAAGTCTG
CCTATGAGGCGCTTTATTCAACTTACCAACAATTCCAACATACCTATGCCAAGACACTACAAACCAATGTGAAAGTACAA
AACTACAAAGCTCGTGTTCATCACTATGACTCAGCCCGTCAGGCAGCTATGTCTGCTAACTTTATTCCTGAAAAGGTCTA
TGATACTCTTATTGAAGAAGTGAACAATCACTTGCCTTTATTGCACCGTTATTTGAAATTGCGACAAGAAGTACTTGGTT
TAGATAGCTTGAAAATGTACGATGTTTACACTCCATTATCAGAAATGACGATGACATTAAGCTATGATGAGGCTTTGGAA
AAAGCTGAAAAAGTTCTTCAAATCTTTGGAACAGAATACAGTGATATTGTGCATCAAGCATTTACTGAACGATGGATAGA
TGTCCAGGTCAAGAAAGGTAAAAGATCAGGAGCTTATTCAGGTGGCTCTTACGATACCAATGCCTTTATGTTATTAAATT
GGCAAGATAATCTAGACAACTTGTTTACCTTAATTCATGAAACAGGTCACAGTTTGCATTCGGCTTTAACACGTAAATAT
CAACCATATGTATATGGTGACTATAGTATCTTCTTAGCAGAAATTGCCTCAACTACAAATGAGAATATTTTAACAGAGGC
ACTCTTAAATGATGTTGAAGACGAGAAACAACGTTTCACTATTTTAAATCATTATTTAGATGGCTTTAGAGGAACCATTT
TCCGTCAGACACAGTTTGCAGAATTTGAACATGCGGTTCATCTTGCTGACCAAAATGGGGAAGTTTTGACCAGTGATTAC
CTCAATCATCTTTATGCTGATCTAAATGAAAAATACTATAATCTTCCGAAAAAAGAAAATAGTTTTATTCAGTACGAATG
GGCAAGGATACCACATTTTTACTATAATTATTATGTTTATCAATATGCTACTGGCTTCGCTGCAGCAAATTATTTAGCTC
ATCAAGTGGTTCATGGTAGCGATGAAGATAAAGAAAATTACCTCAATTATTTAAAATCTGGAAACTCGGATTATCCACTT
AATGTTATCAAAAAAGCAGGAGTGGATATGACAGATGGAACTTATTTAAAAGCAGCTTTTAAAGTTTTTGAAGCTCGACT
GAATGAGCTAGAAGAATTAGTGGCAAAAGGGGTTCATCTTAAGGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.333

99.668

0.691

Multiple sequence alignment