Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM95_RS03295 Genome accession   NZ_LS483397
Coordinates   574942..575751 (+) Length   269 a.a.
NCBI ID   WP_046393354.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 569942..580751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS03270 (NCTC3858_00663) - 570298..570999 (-) 702 WP_012658075.1 amino acid ABC transporter permease -
  DQM95_RS03275 (NCTC3858_00664) - 571014..571829 (-) 816 WP_012658076.1 transporter substrate-binding domain-containing protein -
  DQM95_RS03280 (NCTC3858_00665) - 571843..572622 (-) 780 WP_012658077.1 amino acid ABC transporter ATP-binding protein -
  DQM95_RS03285 (NCTC3858_00666) vicR 572877..573587 (+) 711 WP_015912156.1 response regulator YycF Regulator
  DQM95_RS03290 (NCTC3858_00667) vicK 573580..574938 (+) 1359 WP_012658078.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM95_RS03295 (NCTC3858_00668) vicX 574942..575751 (+) 810 WP_046393354.1 MBL fold metallo-hydrolase Regulator
  DQM95_RS03300 (NCTC3858_00669) rnc 575910..576602 (+) 693 WP_012658080.1 ribonuclease III -
  DQM95_RS03305 (NCTC3858_00670) smc 576603..580148 (+) 3546 WP_037592359.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30200.29 Da        Isoelectric Point: 5.9920

>NTDB_id=1140160 DQM95_RS03295 WP_046393354.1 574942..575751(+) (vicX) [Streptococcus uberis strain NCTC3858]
MEIEGFNYSILASGSTGNSFYLETPKKKILVDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARKYHLD
VYANEKTWQILDERNMIGKIDVSQKHVFERDKMITFGDIDIESFGVSHDAYDPQFYRFMKDNKSFVMLTDTGYVSDRMSG
IIENADAYLIESNHDIEILRSGSYPWSLKQRILSDKGHLSNEDGAGAMIRSMGNKTKKIYLGHLSKENNIKELAHMTMEN
QLAKADLPVGSAFKVLDTSPDSACPLTSI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140160 DQM95_RS03295 WP_046393354.1 574942..575751(+) (vicX) [Streptococcus uberis strain NCTC3858]
ATGGAAATAGAAGGATTTAATTACAGTATATTAGCATCAGGGTCAACGGGAAATAGTTTTTATTTAGAAACACCTAAAAA
GAAAATTTTAGTTGATGCTGGTTTAACTGGCAAAAAAATAACCAGCCTTTTAGCAGAAATTGATCGAAAACCAGAAGATT
TGGATGCTATTTTCATCACCCATGAACATTCAGATCATATCAAAGGGGTTGGAGTATTAGCTCGAAAATACCACTTAGAC
GTATATGCTAATGAGAAAACCTGGCAAATTTTGGATGAACGCAATATGATTGGGAAAATTGATGTTTCCCAAAAACATGT
CTTTGAAAGAGATAAAATGATTACTTTTGGAGATATTGATATTGAAAGTTTTGGAGTGAGTCATGATGCTTATGATCCTC
AATTTTATCGTTTCATGAAAGATAACAAATCTTTTGTCATGTTGACTGATACGGGTTATGTTAGTGACAGAATGTCTGGT
ATTATTGAAAATGCAGATGCCTATTTGATAGAATCCAATCATGATATTGAAATATTGCGGTCAGGTTCATACCCTTGGAG
TTTAAAACAACGTATCCTTTCTGATAAAGGCCATCTTTCAAATGAGGATGGCGCAGGGGCGATGATTCGTAGCATGGGAA
ATAAAACCAAAAAAATTTATTTGGGACATTTGAGTAAAGAAAATAACATCAAAGAATTAGCTCACATGACCATGGAAAAT
CAGTTGGCAAAAGCCGACTTACCAGTTGGATCAGCATTTAAGGTATTAGATACTTCTCCTGATTCAGCTTGCCCTTTAAC
CAGCATATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment