Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM37_RS08460 Genome accession   NZ_LS483394
Coordinates   1685187..1685900 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus pyogenes strain NCTC10880     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680187..1690900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM37_RS08450 (NCTC10880_01675) treC 1681257..1682885 (-) 1629 WP_111695028.1 alpha,alpha-phosphotrehalase -
  DQM37_RS08455 (NCTC10880_01676) treP 1682952..1684976 (-) 2025 WP_076634439.1 PTS system trehalose-specific EIIBC component -
  DQM37_RS08460 (NCTC10880_01677) treR 1685187..1685900 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQM37_RS08470 (NCTC10880_01678) - 1686179..1686516 (-) 338 Protein_1566 winged helix-turn-helix transcriptional regulator -
  DQM37_RS08475 (NCTC10880_01679) - 1686703..1687560 (+) 858 WP_111695029.1 VOC family protein -
  DQM37_RS08480 (NCTC10880_01680) yaaA 1687602..1688333 (+) 732 WP_030127539.1 peroxide stress protein YaaA -
  DQM37_RS08485 (NCTC10880_01681) nrdG 1688507..1689121 (-) 615 WP_030127538.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM37_RS08490 (NCTC10880_01682) - 1689121..1689630 (-) 510 WP_030127537.1 GNAT family N-acetyltransferase -
  DQM37_RS08495 (NCTC10880_01683) - 1689639..1690574 (-) 936 WP_030127536.1 Gfo/Idh/MocA family protein -
  DQM37_RS09105 (NCTC10880_01684) - 1690603..1690749 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1140114 DQM37_RS08460 WP_002982243.1 1685187..1685900(+) (treR) [Streptococcus pyogenes strain NCTC10880]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1140114 DQM37_RS08460 WP_002982243.1 1685187..1685900(+) (treR) [Streptococcus pyogenes strain NCTC10880]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTCTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment