Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DQM65_RS04930 Genome accession   NZ_LS483392
Coordinates   961900..964266 (+) Length   788 a.a.
NCBI ID   WP_111691391.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 956900..969266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS04905 (NCTC11931_00982) - 957245..958543 (-) 1299 WP_111691390.1 N-acetylmuramoyl-L-alanine amidase -
  DQM65_RS04910 (NCTC11931_00983) tsaE 958551..959027 (-) 477 WP_005672264.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM65_RS04915 (NCTC11931_00984) folK 959103..959585 (-) 483 WP_005672262.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DQM65_RS04920 (NCTC11931_00985) pcnB 959595..960953 (-) 1359 WP_111691995.1 polynucleotide adenylyltransferase PcnB -
  DQM65_RS04925 (NCTC11931_00986) dksA 961203..961640 (-) 438 WP_005652560.1 RNA polymerase-binding protein DksA -
  DQM65_RS04930 (NCTC11931_00987) rec2 961900..964266 (+) 2367 WP_111691391.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM65_RS04935 (NCTC11931_00988) msbA 964307..966070 (+) 1764 WP_111691392.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DQM65_RS04940 (NCTC11931_00989) lpxK 966143..967141 (+) 999 WP_111691393.1 tetraacyldisaccharide 4'-kinase -
  DQM65_RS04945 (NCTC11931_00990) kdsB 967210..967974 (+) 765 WP_111691394.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89683.35 Da        Isoelectric Point: 9.9262

>NTDB_id=1140045 DQM65_RS04930 WP_111691391.1 961900..964266(+) (rec2) [Haemophilus influenzae strain NCTC11931]
MKLNLITLAVLLIVADLTLLFLPQSLLLPWQVALVIALVLIFLFIFWRKNFLVSLAFFVASLGYFHHSALSLLKQAQRIT
AQKQMVTFEIQEILHQQDYQTLIATATLTDNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYLSK
GITAVGSVKSAAKIADVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVFFVQIMRRYYSPFQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQLGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFFLVPLILFAVFTNGAFFSWQLANKLAEVITGLISVFQGNWLTVSFNLALFLTALCAGIFMLIIWCIYRKQE
ASSSTWKIKRPRFFTLNLSKPLLKNERINVLLCSFGIILMCFMILLFKQLSKPTWQIDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYLVMERFHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTEFSPWYVRVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=1140045 DQM65_RS04930 WP_111691391.1 961900..964266(+) (rec2) [Haemophilus influenzae strain NCTC11931]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTGGCGTAAAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCTTCTCTTGGCTATTTTCATCATTCGGCTTTGAGTTTATTAAAACAAGCTCAACGTATTACC
GCTCAAAAGCAAATGGTGACTTTTGAGATTCAAGAAATTTTGCATCAACAGGATTATCAAACACTTATCGCCACAGCAAC
ATTGACGGATAACTTACAAGAGCAACGAATTTTTTTAAATTGGAAAGCAAAAGAGGTGCCTCAACTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCTCGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATCTTTCAAAA
GGAATTACGGCTGTTGGAAGCGTAAAAAGTGCGGCGAAAATTGCTGATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGATTATCTCTACAAGGTTTATTGATCGCGTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAAACACTTGGTCAATTTACCAACAAACGAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCTCGTGTTGTGCAAGTATTTTTCCCAACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCCTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTCTTTGTTCAAATAATGAGGAGATATTATTCGCCTTTTCAGCTTTTTACGTTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGTCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTGGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATTGCTGTACCACTTTATAGTTTTTTCCTTGTGCCATTAATTTTATTTGCTGTTTTTACCAACGGCGCGTTTTTTTC
TTGGCAACTTGCAAACAAGCTGGCTGAAGTGATTACTGGGTTAATTTCTGTTTTTCAAGGAAATTGGCTCACGGTTTCAT
TTAATTTAGCATTATTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGTGTATTTATCGAAAACAAGAG
GCTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTCTTATGTGTTTTATGATTTTGTTGTTTAAACAATTGAGCAAACCAA
CTTGGCAGATAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAATTAGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGAAAAAACTATGGGGAAAATTACCGCACTTTTTGTACAGCTGGACGTGATTGGCATTGGCAAGGG
CTACATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTACTGACTGGCGATGCTGAAGCAAAAAATGAACAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTGGGGCATCACGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTCGACCAGATGTGGCG
ATTATTTCTAGTGGACGTTGGAATCCGTGGAAATTCCCCCATTATTTGGTTATGGAAAGGTTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAG
AATTTTCCCCTTGGTATGTGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Competence protein (Competence)

(204-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

93.274

100

0.933

Multiple sequence alignment