Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   XFC3_RS01830 Genome accession   NZ_CP009829
Coordinates   455468..455854 (-) Length   128 a.a.
NCBI ID   WP_031336286.1    Uniprot ID   -
Organism   Xylella fastidiosa strain 3124     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450468..460854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFC3_RS01805 (XFC3_01845) - 450746..451123 (+) 378 WP_031336283.1 DUF4124 domain-containing protein -
  XFC3_RS01810 (XFC3_01850) - 451208..452902 (+) 1695 WP_023906154.1 proline--tRNA ligase -
  XFC3_RS01815 (XFC3_01855) - 453052..453414 (+) 363 Protein_342 H-NS family nucleoid-associated regulatory protein -
  XFC3_RS01820 (XFC3_12720) - 453765..453965 (-) 201 WP_010892976.1 hypothetical protein -
  XFC3_RS01825 (XFC3_01860) - 454534..454884 (+) 351 WP_004083585.1 DMT family protein -
  XFC3_RS01830 (XFC3_01865) pilH 455468..455854 (-) 387 WP_031336286.1 twitching motility response regulator PilH Machinery gene
  XFC3_RS01835 (XFC3_01870) - 455947..456951 (-) 1005 WP_031336287.1 oxidoreductase -
  XFC3_RS01840 (XFC3_01875) hflK 457098..458237 (+) 1140 WP_010892980.1 FtsH protease activity modulator HflK -
  XFC3_RS01845 (XFC3_01880) - 458234..459097 (+) 864 WP_010892981.1 protease modulator HflC -
  XFC3_RS01850 (XFC3_01885) - 459257..459442 (+) 186 WP_031336290.1 DUF2065 family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=114004 XFC3_RS01830 WP_031336286.1 455468..455854(-) (pilH) [Xylella fastidiosa strain 3124]
MARVLIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVIL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=114004 XFC3_RS01830 WP_031336286.1 455468..455854(-) (pilH) [Xylella fastidiosa strain 3124]
ATGGCACGCGTTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGTATCCAGAGAATCGTCGAAAAACTAGGGCACGA
AACCATTACCGCAACCGATGGCAACACCGGGGTGGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAGCCAGCAACGCAACATGTACCAGTCATCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

42.857

92.969

0.398