Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQN61_RS09325 Genome accession   NZ_LS483391
Coordinates   1779948..1780661 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8320     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774948..1785661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN61_RS09315 (NCTC8320_01853) treC 1776017..1777645 (-) 1629 WP_011018305.1 alpha,alpha-phosphotrehalase -
  DQN61_RS09320 (NCTC8320_01854) treP 1777713..1779737 (-) 2025 WP_011018306.1 PTS system trehalose-specific EIIBC component -
  DQN61_RS09325 (NCTC8320_01855) treR 1779948..1780661 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DQN61_RS09335 (NCTC8320_01856) - 1780940..1781278 (-) 339 WP_011018307.1 winged helix-turn-helix transcriptional regulator -
  DQN61_RS09340 - 1781464..1782321 (+) 858 Protein_1748 VOC family protein -
  DQN61_RS09345 (NCTC8320_01859) yaaA 1782363..1783094 (+) 732 WP_011018309.1 peroxide stress protein YaaA -
  DQN61_RS09350 (NCTC8320_01860) nrdG 1783268..1783882 (-) 615 WP_011018310.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQN61_RS09355 (NCTC8320_01861) - 1783882..1784391 (-) 510 WP_011018311.1 GNAT family N-acetyltransferase -
  DQN61_RS09360 (NCTC8320_01862) - 1784400..1785335 (-) 936 WP_011018312.1 Gfo/Idh/MocA family protein -
  DQN61_RS09840 (NCTC8320_01863) - 1785364..1785510 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=1140008 DQN61_RS09325 WP_002992823.1 1779948..1780661(+) (treR) [Streptococcus pyogenes strain NCTC8320]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1140008 DQN61_RS09325 WP_002992823.1 1779948..1780661(+) (treR) [Streptococcus pyogenes strain NCTC8320]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment