Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   XFPR_RS11505 Genome accession   NZ_CP009826
Coordinates   2543308..2545509 (+) Length   733 a.a.
NCBI ID   WP_010895103.1    Uniprot ID   Q9PA31
Organism   Xylella fastidiosa strain Pr8x     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2538308..2550509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFPR_RS11490 (XFPR_11445) - 2539656..2541017 (-) 1362 WP_031337150.1 MATE family efflux transporter -
  XFPR_RS11495 (XFPR_11455) - 2541339..2541854 (-) 516 WP_228762747.1 DUF3106 domain-containing protein -
  XFPR_RS11500 (XFPR_11460) - 2541905..2542870 (-) 966 WP_010895102.1 sigma-70 region 4 domain-containing protein -
  XFPR_RS11505 (XFPR_11465) priA 2543308..2545509 (+) 2202 WP_010895103.1 primosomal protein N' Machinery gene
  XFPR_RS11510 (XFPR_11470) rpoH 2546985..2547851 (-) 867 WP_031337152.1 RNA polymerase sigma factor RpoH -
  XFPR_RS11515 (XFPR_11475) ung 2547985..2548746 (-) 762 WP_010895106.1 uracil-DNA glycosylase -
  XFPR_RS11520 (XFPR_11480) - 2548752..2549600 (-) 849 WP_023907109.1 response regulator -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 81121.35 Da        Isoelectric Point: 9.5234

>NTDB_id=113992 XFPR_RS11505 WP_010895103.1 2543308..2545509(+) (priA) [Xylella fastidiosa strain Pr8x]
MPPTILRVALPIPLPQCFDYLPPSGIPLPDSTLGCRVRVPFGKRELIGVVVELPSAEMSVPLREAFAWIDRIPILDGELA
QSLQWLSHYTHTPLGEILATALPGLLRHGKPLPETWTCWAWRLTETGRTAAPKLRRNSRSAQLAELLTTSDQTEDALNTR
MNHWRTVARNLTKRGYVERIKKPTTVSLIIQTTSNTVPVLNTEQQKAVETLNANVGFKTYLLDGVTGSGKTEVYLQAIAT
CLAASKQALVLVPEIGLTPQLLTNFHARLGIPVHALHSKLADNERARVWAAARCGEARLVLGTRSAVFTPLPHAGLIIVD
EEHDTSYKQQDGIRYNARDFALVRGKALNVPVILGSATPSLESLYNAHNGRYKHLRLTYRAGQAYAPQVRVLDVRKRPLK
DGLSPEVLTGINATLARDEQVLVFKNRRGYSPVLLCHDCGWTATCQQCSTSVHRTPMTVYTGGTYLQCHHCDARQPMPLS
CPDCGSTALQPQGIGTERLEARLIEAFPKHPVVRIDRNTTQHRDALKTQFTELGNAAGILVGTQILAKGHHLPRLTMVVV
VGIDEGLFSADFRATEKLSQQLIQVAGRAGRAKHAGEVWLQTHHPDHPLLQTLINGGYHTFANTELQQRQAAGLPPFAHL
ALLRAEAKDTTSTQQFLATVRKHIPIDNAVECYGPMSAPMPRRAGYERYQLLLSSSQRNTLHRTLNVLIPAIHALPEARR
VRWSLDVDPVDLY

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=113992 XFPR_RS11505 WP_010895103.1 2543308..2545509(+) (priA) [Xylella fastidiosa strain Pr8x]
ATGCCCCCTACGATCCTACGTGTGGCGTTGCCAATCCCTTTACCGCAATGCTTCGACTATCTGCCGCCAAGCGGCATACC
ACTCCCAGATTCAACCTTAGGCTGCCGCGTACGTGTGCCATTCGGGAAACGTGAGCTGATCGGTGTAGTGGTCGAACTTC
CATCAGCCGAAATGTCGGTACCATTACGCGAGGCATTCGCCTGGATTGACCGTATACCAATTCTAGATGGCGAGCTGGCA
CAATCGTTACAGTGGCTGTCACACTACACGCATACCCCACTCGGTGAGATATTAGCTACGGCTCTTCCCGGGCTGTTACG
TCATGGTAAACCCTTACCAGAGACCTGGACCTGCTGGGCTTGGCGTCTAACCGAAACCGGGCGCACTGCCGCTCCCAAGC
TGCGTCGCAACAGCCGCTCAGCACAACTGGCTGAATTACTCACCACCAGTGATCAAACGGAAGATGCACTTAACACTCGG
ATGAATCACTGGCGCACAGTTGCACGCAACCTAACCAAGCGTGGTTATGTCGAGCGCATCAAGAAACCTACAACCGTATC
TCTAATCATCCAGACCACCAGCAACACCGTACCTGTACTCAACACTGAACAACAGAAAGCAGTTGAGACACTAAACGCTA
ACGTAGGCTTCAAAACTTATCTGCTAGATGGAGTCACCGGCAGCGGTAAAACAGAAGTCTACCTACAAGCCATCGCTACC
TGCTTAGCTGCGAGTAAGCAAGCATTGGTCTTAGTCCCTGAGATCGGCTTGACACCTCAACTTCTAACCAACTTCCATGC
CCGCCTCGGAATACCCGTGCATGCCCTGCACTCCAAATTGGCAGACAACGAACGCGCCCGCGTGTGGGCGGCGGCCCGAT
GTGGCGAGGCACGACTGGTACTAGGAACTCGCTCAGCGGTGTTCACACCCCTACCTCATGCCGGACTAATTATAGTAGAT
GAGGAACACGACACGAGTTACAAGCAGCAAGACGGGATACGTTACAACGCGCGCGATTTCGCATTGGTGCGCGGCAAAGC
ACTGAACGTACCAGTCATCCTCGGGAGTGCCACTCCGTCACTGGAATCACTGTACAACGCGCATAACGGACGCTACAAGC
ACCTCCGCCTCACCTACCGTGCCGGTCAAGCGTATGCCCCTCAGGTGCGCGTACTAGACGTACGCAAAAGACCACTGAAA
GACGGCCTATCACCCGAGGTATTAACAGGCATTAACGCAACTTTAGCGCGTGATGAGCAGGTACTCGTATTCAAGAACCG
GCGCGGCTATTCACCAGTGTTGCTATGTCACGACTGCGGCTGGACCGCTACCTGTCAGCAGTGCAGCACATCAGTGCACC
GCACACCAATGACTGTATACACCGGCGGAACCTACTTACAGTGCCACCACTGCGACGCACGCCAGCCAATGCCACTATCA
TGCCCAGACTGCGGCAGTACAGCGCTACAGCCACAGGGAATAGGCACTGAACGCCTAGAAGCACGCCTGATTGAGGCTTT
CCCTAAACATCCTGTGGTGCGTATTGATCGCAACACAACCCAGCACCGCGACGCACTAAAAACCCAATTCACCGAACTCG
GCAATGCCGCTGGCATTTTAGTAGGCACCCAGATTCTAGCCAAAGGGCATCACCTACCACGCTTAACGATGGTCGTCGTC
GTTGGAATCGACGAAGGCCTATTCTCAGCCGACTTCCGCGCCACTGAAAAGCTCTCCCAGCAACTGATCCAAGTTGCTGG
CCGCGCTGGCCGTGCTAAACATGCCGGAGAAGTCTGGCTACAAACTCACCACCCTGATCACCCACTGTTGCAAACACTAA
TCAACGGCGGCTACCACACCTTTGCTAATACGGAGCTACAACAACGCCAAGCCGCTGGGTTGCCGCCATTCGCACACTTG
GCACTCCTGCGTGCTGAAGCGAAAGACACCACCTCAACACAACAATTTCTCGCCACGGTACGCAAACACATTCCAATCGA
CAATGCAGTCGAATGCTACGGCCCAATGTCGGCCCCCATGCCGCGTCGCGCCGGCTACGAGCGCTACCAATTATTGCTGT
CCAGCTCCCAACGTAACACACTACACCGCACACTCAATGTCTTGATACCAGCGATTCATGCACTGCCAGAAGCACGCCGA
GTCCGCTGGTCGTTAGACGTGGATCCAGTTGATCTTTACTAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-103)

Primosomal protein N C-terminal domain (PriA_C)

(636-729)

DEAD/DEAH box helicase (DEAD)

(204-362)

Helicase conserved C-terminal domain (Helicase_C)

(505-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

40.595

100

0.409