Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM81_RS02210 Genome accession   NZ_LS483389
Coordinates   420392..421117 (+) Length   241 a.a.
NCBI ID   WP_038434223.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10879     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 415392..426117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM81_RS02180 (NCTC10879_00433) - 415571..417031 (+) 1461 WP_038434226.1 NCS2 family permease -
  DQM81_RS02185 (NCTC10879_00434) tsaE 417185..417646 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM81_RS02190 (NCTC10879_00435) - 417621..418145 (+) 525 WP_038434225.1 GNAT family N-acetyltransferase -
  DQM81_RS02195 (NCTC10879_00436) brpA 418154..419437 (+) 1284 WP_002994335.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM81_RS02200 (NCTC10879_00437) - 419548..419904 (-) 357 WP_111688243.1 chemotaxis protein -
  DQM81_RS02205 (NCTC10879_00438) - 419901..420320 (-) 420 WP_011285081.1 HIT family protein -
  DQM81_RS02210 (NCTC10879_00439) pptA 420392..421117 (+) 726 WP_038434223.1 ABC transporter ATP-binding protein Regulator
  DQM81_RS02215 (NCTC10879_00440) - 421120..422154 (+) 1035 WP_038434222.1 ABC transporter permease -
  DQM81_RS02220 (NCTC10879_00441) ccrZ 422218..423009 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQM81_RS02225 (NCTC10879_00442) trmB 423009..423644 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM81_RS02235 (NCTC10879_00444) rimP 423903..424439 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQM81_RS02240 (NCTC10879_00445) nusA 424614..425771 (+) 1158 WP_002988817.1 transcription termination factor NusA -
  DQM81_RS02245 (NCTC10879_00446) rnpM 425787..426083 (+) 297 WP_002983486.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26664.72 Da        Isoelectric Point: 4.5624

>NTDB_id=1139845 DQM81_RS02210 WP_038434223.1 420392..421117(+) (pptA) [Streptococcus pyogenes strain NCTC10879]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVVLHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1139845 DQM81_RS02210 WP_038434223.1 420392..421117(+) (pptA) [Streptococcus pyogenes strain NCTC10879]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGGTTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGATCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.385

99.17

0.718
  pptA Streptococcus thermophilus LMD-9

71.548

99.17

0.71

Multiple sequence alignment