Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM45_RS09715 Genome accession   NZ_LS483388
Coordinates   1954794..1955507 (+) Length   237 a.a.
NCBI ID   WP_003084916.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10999     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1949794..1960507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS09705 (NCTC10999_01971) treC 1950887..1952518 (-) 1632 WP_003085815.1 alpha,alpha-phosphotrehalase -
  DQM45_RS09710 (NCTC10999_01972) treP 1952583..1954577 (-) 1995 WP_003084014.1 PTS system trehalose-specific EIIBC component -
  DQM45_RS09715 (NCTC10999_01973) treR 1954794..1955507 (+) 714 WP_003084916.1 trehalose operon repressor Regulator
  DQM45_RS09720 - 1955668..1955946 (+) 279 WP_050791087.1 hypothetical protein -
  DQM45_RS09725 (NCTC10999_01974) yaaA 1955998..1956729 (+) 732 WP_003085110.1 peroxide stress protein YaaA -
  DQM45_RS09730 (NCTC10999_01975) nrdG 1956852..1957466 (-) 615 WP_003083420.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM45_RS09735 (NCTC10999_01976) - 1957473..1957976 (-) 504 WP_003085547.1 GNAT family N-acetyltransferase -
  DQM45_RS09740 (NCTC10999_01977) - 1957988..1958920 (-) 933 WP_003083891.1 Gfo/Idh/MocA family protein -
  DQM45_RS10165 (NCTC10999_01978) - 1958942..1959091 (-) 150 WP_003086019.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27445.80 Da        Isoelectric Point: 9.8885

>NTDB_id=1139820 DQM45_RS09715 WP_003084916.1 1954794..1955507(+) (treR) [Streptococcus porcinus strain NCTC10999]
MKKYQYIFKDLESKISKGVYAIDDFLPPENELSRKYKASRDTVRKALALLAKDGLVKKQQGRGTQVIKHHQILFPISELT
SYQELVAYFNMDSKTNVIAIDKLIVDEDLSKLTGFPPRAILWRITRQRVVDGIASVLDIDYLSKDIVPTISREVAEKSLY
QYLEKDLKLAIDFALKEVTIDQVNDKDKILLDLGSDRHLVSVKSKVYLSSNEQFQFTESRHKLEKFKFVDFARRKPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1139820 DQM45_RS09715 WP_003084916.1 1954794..1955507(+) (treR) [Streptococcus porcinus strain NCTC10999]
ATGAAGAAGTATCAATATATATTTAAAGATTTAGAATCAAAAATATCCAAGGGCGTTTATGCTATCGATGATTTTTTACC
GCCTGAAAACGAATTAAGTAGAAAGTATAAGGCCAGCCGAGATACCGTTCGCAAAGCCCTCGCTCTCTTAGCTAAAGATG
GTTTAGTTAAGAAGCAACAAGGTCGAGGGACTCAAGTTATTAAACACCATCAAATCCTTTTTCCTATTTCAGAATTAACA
AGCTACCAAGAATTAGTTGCCTATTTTAATATGGACTCTAAAACTAATGTTATTGCTATTGACAAGCTAATTGTGGATGA
GGATCTGTCAAAACTAACAGGTTTCCCTCCCCGTGCCATTCTTTGGCGAATCACCCGCCAAAGAGTAGTTGACGGTATTG
CCTCTGTCCTAGATATTGATTACCTCAGCAAGGATATTGTACCAACTATCAGCCGTGAAGTTGCTGAAAAGTCTCTTTAC
CAATACTTAGAGAAAGACTTAAAGTTAGCTATTGATTTTGCCTTAAAAGAAGTTACCATCGATCAAGTCAATGACAAAGA
TAAAATTTTACTCGATTTAGGATCAGACCGCCACCTTGTTTCTGTTAAATCAAAAGTTTACCTCTCATCTAATGAGCAAT
TCCAATTTACGGAGAGCCGTCATAAGCTAGAAAAATTTAAATTTGTTGATTTTGCAAGACGCAAACCAAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

66.667

98.734

0.658

Multiple sequence alignment