Detailed information NTG1139816

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM45_RS09070
• Genome accession: NZ_LS483388
• Coordinates: 1815446..1816381 (-)
• Length: 311 a.a.
• NCBI ID: WP_003083860.1
• Uniprot ID: -
• Organism: Streptococcus porcinus strain NCTC10999
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1810446..1821381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM45_RS09045 (NCTC10999_01838)	tsaD	1811078..1812088 (-)	1011	WP_003085311.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
DQM45_RS09050 (NCTC10999_01839)	rimI	1812078..1812506 (-)	429	WP_003083288.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM45_RS09055 (NCTC10999_01840)	tsaB	1812506..1813198 (-)	693	WP_003083824.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM45_RS09060 (NCTC10999_01841)	-	1813477..1813707 (+)	231	WP_003085221.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM45_RS09065 (NCTC10999_01842)	rnjA	1813709..1815394 (+)	1686	WP_003086075.1	ribonuclease J1	-
DQM45_RS09070 (NCTC10999_01843)	amiF	1815446..1816381 (-)	936	WP_003083860.1	ABC transporter ATP-binding protein	Regulator
DQM45_RS09075 (NCTC10999_01844)	oppD	1816381..1817427 (-)	1047	WP_003083752.1	ABC transporter ATP-binding protein	Regulator
DQM45_RS09080 (NCTC10999_01845)	-	1817438..1818469 (-)	1032	WP_003085327.1	ABC transporter permease	-
DQM45_RS09085 (NCTC10999_01846)	-	1818479..1819393 (-)	915	WP_003083822.1	ABC transporter permease	-
DQM45_RS09090 (NCTC10999_01847)	-	1819465..1821123 (-)	1659	WP_003083189.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35355.36 Da
• Isoelectric Point: 6.9911

>NTDB_id=1139816 DQM45_RS09070 WP_003083860.1 1815446..1816381(-) (amiF) [Streptococcus porcinus strain NCTC10999]
MTDKRKKLVELKNVSLIFNKGKKNEVKAIDKVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGDIIFNGKTVSNL
KGKELHEFRKDAQMIFQDPQASLNSRMKIRDIVAEGLDIHKLSPNKAEREKRVQELLERVGLNRDHATRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQEERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERQRVAEIYDPSIEMDGQERQMHEITPGHFVLSTEAEAEAYRSQQNK

Nucleotide

• Length: 936 bp

>NTDB_id=1139816 DQM45_RS09070 WP_003083860.1 1815446..1816381(-) (amiF) [Streptococcus porcinus strain NCTC10999]
ATGACAGATAAACGCAAAAAATTAGTTGAGCTTAAGAATGTTTCACTGATCTTCAATAAAGGTAAAAAGAATGAAGTTAA
AGCTATTGATAAGGTTAGCTTTGACATCTATGAAGGTGAAGTATTTGGGCTTGTCGGAGAATCTGGATCAGGAAAAACGA
CAGTTGGCCGTGCTATTTTGAAGCTTTATGATATCAATGAAGGTGATATTATATTTAATGGTAAAACAGTTTCCAATCTT
AAAGGAAAAGAGTTGCATGAGTTCCGTAAAGATGCTCAGATGATTTTCCAAGATCCACAAGCAAGCCTTAATAGTCGGAT
GAAAATTAGAGACATTGTTGCAGAAGGGTTAGATATTCATAAACTTTCACCAAACAAAGCAGAGCGTGAGAAACGGGTTC
AAGAATTACTAGAACGTGTTGGTTTGAACCGAGACCACGCAACGCGTTATCCTCATGAATTTTCTGGTGGCCAACGTCAA
CGAATTGGTATTGCTCGAGCGCTGGCTGTCAAACCGAAATTTATTATTGCCGATGAGCCTATCTCTGCTCTTGATGTATC
TATTCAAGCACAGGTTGTTAACTTAATGCAAAGGTTACAAGAAGAAAGAGGATTGACTTATCTCTTTATTGCACATGATT
TGTCGATGGTTAAATATATTTCTGATCGTATTGGTGTTATGCATTGGGGTAAAATGTTAGAGATTGGTACGTCTGATGAT
GTTTATAATAACCCTATCCATCCCTACACTAGGAGTCTCCTCTCTGCTATCCCAGAACCAGATCCAGATATTGAGCGCCA
ACGTGTTGCTGAAATCTACGATCCAAGTATCGAAATGGATGGACAAGAACGCCAAATGCATGAAATTACGCCAGGTCATT
TTGTTTTATCGACCGAAGCAGAAGCAGAAGCTTATAGATCTCAACAAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.247	99.035	0.527
amiF	Streptococcus thermophilus LMG 18311	52.922	99.035	0.524
amiF	Streptococcus salivarius strain HSISS4	52.597	99.035	0.521