Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM45_RS08335 Genome accession   NZ_LS483388
Coordinates   1672830..1673555 (-) Length   241 a.a.
NCBI ID   WP_003085185.1    Uniprot ID   A0A4V0HDU1
Organism   Streptococcus porcinus strain NCTC10999     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667830..1678555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS08300 (NCTC10999_01688) rnpM 1668006..1668302 (-) 297 WP_003084094.1 RNase P modulator RnpM -
  DQM45_RS08305 (NCTC10999_01689) nusA 1668318..1669472 (-) 1155 WP_003084329.1 transcription termination factor NusA -
  DQM45_RS08310 (NCTC10999_01690) rimP 1669534..1670031 (-) 498 WP_167394855.1 ribosome maturation factor RimP -
  DQM45_RS08320 (NCTC10999_01692) trmB 1670306..1670941 (-) 636 WP_003085540.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM45_RS08325 (NCTC10999_01693) ccrZ 1670941..1671732 (-) 792 WP_003084957.1 cell cycle regulator CcrZ -
  DQM45_RS08330 (NCTC10999_01694) - 1671793..1672827 (-) 1035 WP_003085379.1 ABC transporter permease -
  DQM45_RS08335 (NCTC10999_01695) pptA 1672830..1673555 (-) 726 WP_003085185.1 ABC transporter ATP-binding protein Regulator
  DQM45_RS08340 (NCTC10999_01696) - 1673991..1674410 (+) 420 WP_003082804.1 HIT family protein -
  DQM45_RS08345 (NCTC10999_01697) - 1674407..1674691 (+) 285 WP_003084563.1 hypothetical protein -
  DQM45_RS08350 (NCTC10999_01698) brpA 1674764..1676059 (-) 1296 WP_003084213.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM45_RS08355 (NCTC10999_01699) - 1676067..1676591 (-) 525 WP_003085921.1 GNAT family N-acetyltransferase -
  DQM45_RS08360 (NCTC10999_01700) tsaE 1676584..1677027 (-) 444 WP_003083787.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26688.02 Da        Isoelectric Point: 4.5971

>NTDB_id=1139812 DQM45_RS08335 WP_003085185.1 1672830..1673555(-) (pptA) [Streptococcus porcinus strain NCTC10999]
MLKIENLTGGYINIPVLKDITFSVDDGQLVGLIGLNGAGKSTTIKEIIGLLRPYKGTIKIDGLSLEEDPAAYRKKIGFIP
ETPSLYEELTLAEHIETIAMAYDIEVSDAFERAQPLLKTYRLLDRLDWYPSQFSKGMKQKVMIICAFIIDPSLFILDEPF
LGLDPLAISDLIAYLEVEKGKGKSILMSTHVLDSAEKMCDSFVILHQGEIRAQGTLSDLRATFGNPKASLNDIYLALTTE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1139812 DQM45_RS08335 WP_003085185.1 1672830..1673555(-) (pptA) [Streptococcus porcinus strain NCTC10999]
ATGCTGAAAATCGAAAATTTAACAGGGGGATATATTAATATTCCTGTTCTGAAAGATATTACTTTCTCAGTTGATGACGG
CCAGTTAGTAGGTTTAATAGGTTTAAATGGCGCTGGGAAATCAACTACTATTAAGGAAATTATCGGACTTTTAAGACCTT
ATAAGGGCACAATAAAAATTGATGGGCTAAGCTTGGAAGAAGACCCAGCTGCTTATCGTAAAAAAATTGGATTTATTCCA
GAAACACCAAGTTTATATGAAGAATTGACTTTGGCAGAACATATTGAAACGATAGCTATGGCTTATGATATAGAGGTTTC
AGACGCTTTTGAACGTGCACAGCCTCTACTTAAAACTTATCGTTTGTTAGACCGATTAGATTGGTATCCAAGCCAGTTTT
CAAAAGGAATGAAACAAAAGGTAATGATTATTTGTGCTTTTATTATTGATCCTAGTCTCTTCATTTTAGATGAACCTTTC
TTGGGACTTGATCCTTTAGCTATCTCGGATTTAATTGCTTATTTAGAAGTTGAAAAAGGAAAAGGGAAGTCTATTTTAAT
GAGCACTCATGTCCTTGATTCAGCAGAAAAAATGTGTGATTCTTTTGTAATTCTACACCAGGGAGAGATAAGAGCTCAAG
GAACTCTATCTGATTTACGAGCAACTTTTGGAAATCCAAAAGCCAGTTTGAATGATATCTATTTAGCGTTAACAACTGAG
GTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0HDU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.109

98.755

0.722
  pptA Streptococcus thermophilus LMD-9

73.109

98.755

0.722

Multiple sequence alignment