Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   XFPR_RS09095 Genome accession   NZ_CP009826
Coordinates   1991515..1993992 (-) Length   825 a.a.
NCBI ID   WP_031336932.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Pr8x     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1986515..1998992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFPR_RS09075 (XFPR_09000) lpxK 1987644..1988663 (-) 1020 WP_023907911.1 tetraacyldisaccharide 4'-kinase -
  XFPR_RS09080 (XFPR_09005) msbA 1988660..1990408 (-) 1749 WP_031336930.1 lipid A export permease/ATP-binding protein MsbA -
  XFPR_RS09085 (XFPR_09010) - 1990426..1990863 (-) 438 WP_004089267.1 biopolymer transporter ExbD -
  XFPR_RS09090 (XFPR_09015) exbB 1990868..1991530 (-) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  XFPR_RS09095 (XFPR_09020) comA 1991515..1993992 (-) 2478 WP_031336932.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  XFPR_RS09100 (XFPR_09025) lolD 1994341..1995063 (-) 723 WP_023907913.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  XFPR_RS09105 (XFPR_09030) - 1995056..1996297 (-) 1242 WP_023907914.1 lipoprotein-releasing ABC transporter permease subunit -
  XFPR_RS09110 (XFPR_09035) - 1996323..1996694 (-) 372 WP_230873139.1 hypothetical protein -
  XFPR_RS09115 (XFPR_09040) - 1996726..1996974 (-) 249 WP_023907916.1 succinate dehydrogenase assembly factor 2 -
  XFPR_RS09120 (XFPR_09045) - 1997095..1997880 (-) 786 WP_010893592.1 succinate dehydrogenase iron-sulfur subunit -

Sequence

Protein


Download         Length: 825 a.a.        Molecular weight: 90758.65 Da        Isoelectric Point: 9.0669

>NTDB_id=113976 XFPR_RS09095 WP_031336932.1 1991515..1993992(-) (comA) [Xylella fastidiosa strain Pr8x]
MDDMKPEQRHVLQRCWVDVLSVTRHATCLRYLGFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFAGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KVVAPGPRNALHAGSVWQLHVRLRAPHSLLNPGGFDSERYALAQGIVATGYVRAPTMAREVAAATGINAWRERMSVRIAD
AVLSEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRLFPHLAWRCPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLLWCMQDG
HAAPWRGFLSAQGVATLGLLPFTVALFGQVSFVGPFANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGTCFEW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSTYLGNESSCVLRIETRWGSALLTGDIGKVVERDLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWRETAEVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide


Download         Length: 2478 bp        

>NTDB_id=113976 XFPR_RS09095 WP_031336932.1 1991515..1993992(-) (comA) [Xylella fastidiosa strain Pr8x]
ATGGACGATATGAAACCCGAGCAGCGACACGTGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGACCCGGCACGCAAC
CTGCTTGCGTTACCTCGGGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGTTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGCCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGCGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGCACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGTGGTAGCGCCGGGGCCACGCAATGCATTGCATGCTGGATCTGTATGGCAGTTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGCTGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTG
CGCCGACGATGGCACGTGAGGTGGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGTGCGTATTGCTGAT
GCGGTGTTGTCGGAAGCATCGGTGTATTTACGTGCGTTGGCGTTGGGTGATACCCGGGGCTTGTCCCAACAGGATTGGGA
GGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGGCTTTTCCCACATTTGGCGTGGCGTTGTCCGCGACCACTCGCCATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTCAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCCCGCCTCACTCGGCGTCGTGCCATGCCGGGGCATGTCCTGGGGCTTGCCTTGCTGGTCGTACTGGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTACTGTGGTGTATGCAAGACGGT
CATGCAGCGCCTTGGCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAAGTTTCGTTTGTTGGGCCTTTCGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGAACTTGTTTCGAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
ATTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGCTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCGGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACCTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCGCCGGATGCTCCACTCGACGTGGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGACGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGAGACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGATTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCACATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGGGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGCGTGAAACGGCAGAGGTGTTGCTTACTGCGCACAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTTTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGCCGC
CGATCCGCTGCTATCCTATCAGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(58-216)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-722)

Competence protein (Competence)

(253-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

37.394

100

0.376