Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM64_RS00775 Genome accession   NZ_LS483387
Coordinates   113512..114876 (+) Length   454 a.a.
NCBI ID   WP_001085195.1    Uniprot ID   A0AAV3JMW2
Organism   Streptococcus agalactiae strain NCTC8187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108512..119876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM64_RS00750 (NCTC8187_00148) rpoE 109222..109797 (+) 576 WP_000418424.1 DNA-directed RNA polymerase subunit delta -
  DQM64_RS00755 (NCTC8187_00149) - 110070..111674 (+) 1605 WP_000170432.1 CTP synthase -
  DQM64_RS00760 (NCTC8187_00150) - 111783..112709 (+) 927 WP_000723856.1 alpha/beta hydrolase -
  DQM64_RS00770 (NCTC8187_00152) - 112904..113350 (+) 447 WP_000049186.1 dUTP diphosphatase -
  DQM64_RS00775 (NCTC8187_00153) radA 113512..114876 (+) 1365 WP_001085195.1 DNA repair protein RadA Machinery gene
  DQM64_RS00780 (NCTC8187_00154) - 115012..115509 (+) 498 WP_000214743.1 carbonic anhydrase -
  DQM64_RS00785 (NCTC8187_00155) - 115663..116982 (+) 1320 WP_000759715.1 FAD-containing oxidoreductase -
  DQM64_RS00790 (NCTC8187_00156) - 117289..118455 (-) 1167 WP_000160604.1 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49562.84 Da        Isoelectric Point: 6.5148

>NTDB_id=1139725 DQM64_RS00775 WP_001085195.1 113512..114876(+) (radA) [Streptococcus agalactiae strain NCTC8187]
MAKKKSVFTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIE
KIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIR
RVTRIEQRINEASKLGFTKIYAPKNSLAGIEIPKGIDVIGVTTVSQVLKAVFST

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1139725 DQM64_RS00775 WP_001085195.1 113512..114876(+) (radA) [Streptococcus agalactiae strain NCTC8187]
GTGGCTAAGAAAAAATCAGTCTTCACCTGTCAAGAGTGTGGTTACCAATCACCTAAGTATTTGGGACGTTGTCCAAATTG
CTCAGCCTGGTCTTCATTTGTAGAAGAGGTTGAAGTTCAAGAAGTTAAAAATGCACGAGTTAGTTTGAACGGTGAAAAGT
CCCGACCGACGAAGTTAAAAGATGTTTCCTCAATTAACTATTCTAGAACTAAGACTGATATGGATGAATTTAACCGTGTT
CTAGGAGGCGGTGTTGTACCAGGAAGTTTGGTTCTGATTGGAGGAGACCCTGGGATAGGTAAATCTACTTTATTACTACA
AGTATCAACTCAGCTAGCTAATAAAGGTACAGTATTATATGTCTCAGGTGAGGAATCTGCAGAACAGATTAAGTTACGAA
GTGAGCGTCTAGGCGATATCGATAATGAATTTTACCTTTATGCCGAGACTAATATGCAAAGTATTCGGTCGGAGATTGAG
AAGATTAAACCAGATTTTCTTATTATTGATTCTATACAAACTATTATGAGTCCCGAAGTATCAAGTGTCCAAGGCTCTGT
TAGCCAAGTTCGCGAAGTGACCGCTGAGTTGATGCAGTTAGCTAAAACTAATAATATTGCTACTTTTATTGTAGGTCATG
TGACTAAGGAGGGAACATTAGCAGGCCCTCGAATGCTAGAACATATGGTGGATACGGTTCTTTATTTTGAAGGGGAGCGT
CATCACACGTTCCGTATTTTACGGGCAGTCAAAAACCGTTTTGGTTCGACCAATGAAATAGGTATCTTTGAAATGCAGTC
GGGTGGTCTAGTTGAAGTTTTGAATCCAAGTCAAGTTTTTCTTGAAGAACGTTTAGACGGTGCAACAGGATCTGCTATTG
TTGTTACTATGGAAGGAACAAGGCCTATTTTAGCAGAGGTTCAAGCTTTAGTGACTCCAACTGTTTTTGGAAATGCTAAG
CGCACAACCACAGGTCTTGACTTTAATCGTGTCAGTCTTATTATGGCAGTTCTAGAAAAACGTTGTGGTTTATTGCTTCA
AAATCAAGATGCCTATTTAAAATCAGCGGGTGGTGTTAAATTGGATGAACCAGCAATTGATTTAGCTGTAGCTGTAGCTA
TTGCTTCCAGTTACAAAGAAAAACCCACAAATCCACAAGAATCATTTATTGGAGAAATTGGACTCACTGGTGAGATTCGT
CGCGTGACACGTATTGAGCAACGTATTAATGAGGCTAGTAAATTGGGCTTTACTAAAATTTACGCACCAAAGAATTCTCT
AGCTGGGATTGAAATACCTAAAGGCATTGATGTTATTGGTGTGACAACTGTTAGTCAGGTCTTAAAAGCAGTGTTTTCAA
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.079

99.78

0.879
  radA Streptococcus pneumoniae D39

88.079

99.78

0.879
  radA Streptococcus pneumoniae R6

88.079

99.78

0.879
  radA Streptococcus pneumoniae TIGR4

88.079

99.78

0.879
  radA Streptococcus mitis NCTC 12261

88.079

99.78

0.879
  radA Streptococcus mitis SK321

87.859

99.78

0.877
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.78

0.628

Multiple sequence alignment