Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM82_RS02405 Genome accession   NZ_LS483386
Coordinates   440967..441776 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13742     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 435967..446776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM82_RS02385 (NCTC13742_00465) - 436409..437656 (+) 1248 WP_023612155.1 AMP-binding protein -
  DQM82_RS02390 (NCTC13742_00466) - 437712..438746 (+) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  DQM82_RS02395 (NCTC13742_00467) vicR 438908..439618 (+) 711 WP_023612167.1 response regulator YycF Regulator
  DQM82_RS02400 (NCTC13742_00468) vicK 439611..440963 (+) 1353 WP_023078748.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM82_RS02405 (NCTC13742_00469) vicX 440967..441776 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQM82_RS02410 (NCTC13742_00470) rnc 442207..442899 (+) 693 WP_002990670.1 ribonuclease III -
  DQM82_RS02415 (NCTC13742_00471) smc 442900..446439 (+) 3540 WP_023612168.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1139693 DQM82_RS02405 WP_002985641.1 440967..441776(+) (vicX) [Streptococcus pyogenes strain NCTC13742]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1139693 DQM82_RS02405 WP_002985641.1 440967..441776(+) (vicX) [Streptococcus pyogenes strain NCTC13742]
ATGAATGAGAGTGGTTTTAAATACAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment