Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   DQM63_RS08385 Genome accession   NZ_LS483385
Coordinates   1683675..1684388 (+) Length   237 a.a.
NCBI ID   WP_032911121.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1678675..1689388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS08375 (NCTC7863_01647) treC 1679738..1681369 (-) 1632 WP_002913257.1 alpha,alpha-phosphotrehalase -
  DQM63_RS08380 (NCTC7863_01648) treP 1681442..1683487 (-) 2046 WP_002913256.1 PTS system trehalose-specific EIIBC component -
  DQM63_RS08385 (NCTC7863_01649) treR 1683675..1684388 (+) 714 WP_032911121.1 trehalose operon repressor Regulator
  DQM63_RS08390 (NCTC7863_01650) - 1684756..1686096 (-) 1341 WP_002913253.1 hemolysin family protein -
  DQM63_RS08395 (NCTC7863_01651) - 1686248..1687372 (-) 1125 WP_002894636.1 AI-2E family transporter -
  DQM63_RS08400 (NCTC7863_01652) - 1687447..1688241 (+) 795 WP_002913252.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27830.81 Da        Isoelectric Point: 8.9117

>NTDB_id=1139641 DQM63_RS08385 WP_032911121.1 1683675..1684388(+) (treR) [Streptococcus sanguinis strain NCTC7863]
MKKYKQLFKQIEKDILEERYAVGDFLPSEHQLTEDYQVSRDTVRKALALLQEEGLIEKVRGQGSKVIKHEQFDFPVSKLT
SYQEVVKQNNMQSKTNVVSLEKITVDQKLSDITGFPPYRLVWRIVRQRVVDQVASVLDIDYLDKGIVPYLTREIAEQSIY
AYLENDLKLNIAYAKKEFTIDHANDRDKILMDLGKDQQVVSVKSQVYLADGRQFQYTESRHKLDKFRFVDFAKRQKE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1139641 DQM63_RS08385 WP_032911121.1 1683675..1684388(+) (treR) [Streptococcus sanguinis strain NCTC7863]
ATGAAGAAATATAAACAATTATTCAAACAAATTGAGAAAGATATTTTAGAGGAACGTTATGCAGTCGGAGACTTCTTGCC
CAGCGAACACCAGCTGACAGAAGACTACCAGGTCAGCCGCGACACTGTTCGCAAGGCTCTGGCGCTGCTGCAAGAAGAAG
GATTGATTGAAAAAGTCCGCGGACAGGGTTCCAAAGTCATCAAGCATGAACAGTTTGACTTTCCTGTGTCTAAGCTGACC
AGCTATCAAGAAGTAGTCAAGCAGAATAATATGCAGTCCAAAACCAATGTTGTCAGCTTGGAAAAGATTACCGTAGATCA
GAAACTGTCTGATATCACTGGCTTCCCTCCCTACCGACTAGTTTGGCGAATCGTCCGTCAACGCGTTGTAGACCAAGTCG
CCTCTGTCTTAGACATTGACTATTTAGACAAGGGTATCGTCCCCTACTTGACAAGGGAAATCGCTGAGCAATCCATTTAC
GCCTATTTAGAAAATGACTTAAAGCTCAATATCGCTTATGCCAAAAAGGAATTTACCATTGACCATGCCAATGACCGAGA
CAAGATTCTCATGGACCTAGGCAAGGACCAGCAGGTCGTCTCTGTCAAATCCCAGGTCTATCTGGCAGACGGCCGCCAGT
TTCAATATACTGAGAGCCGGCACAAGCTAGACAAATTTCGCTTTGTGGATTTTGCTAAGCGCCAGAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.338

100

0.603


Multiple sequence alignment