Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM63_RS02335 Genome accession   NZ_LS483385
Coordinates   451062..452819 (+) Length   585 a.a.
NCBI ID   WP_002913876.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 446062..457819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02310 (NCTC7863_00449) scrK 446910..447809 (+) 900 WP_002907200.1 fructokinase ScrK -
  DQM63_RS02315 (NCTC7863_00450) - 447856..448266 (+) 411 WP_002913879.1 peptide deformylase -
  DQM63_RS02320 (NCTC7863_00451) - 448345..448680 (+) 336 WP_002903845.1 hypothetical protein -
  DQM63_RS02325 (NCTC7863_00452) - 448855..449313 (+) 459 WP_002913878.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQM63_RS02330 (NCTC7863_00453) rcrP 449306..451072 (+) 1767 WP_032911207.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02335 (NCTC7863_00454) rcrQ 451062..452819 (+) 1758 WP_002913876.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02340 (NCTC7863_00455) - 453120..454478 (+) 1359 WP_002913875.1 cobyrinate a,c-diamide synthase -
  DQM63_RS02345 (NCTC7863_00456) cbiB 454480..455430 (+) 951 WP_002913874.1 adenosylcobinamide-phosphate synthase CbiB -
  DQM63_RS02350 (NCTC7863_00457) - 455440..456138 (+) 699 WP_002901147.1 cobalt-precorrin-8 methylmutase -
  DQM63_RS02355 (NCTC7863_00458) - 456139..456843 (+) 705 WP_002901146.1 cobalt-precorrin-8 methylmutase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64505.51 Da        Isoelectric Point: 5.0990

>NTDB_id=1139618 DQM63_RS02335 WP_002913876.1 451062..452819(+) (rcrQ) [Streptococcus sanguinis strain NCTC7863]
MENKKPSLFSQIRPYLKGFQLPLTLAFVGAVLSNIITVYGPNKLKEITNLISEGLATSIDLKAVSEIALLLTVLYAVGAL
LNYGQSFIISTVIQYFSKRLRTAIAEKINKLPLGYFDGHSQGDTLSRVTNDVDTVGQSLNQSLGNVISASLLLVAVVLTM
FFMNWILALVTILATVLGFVFVGLIMGKSQGYFTAQQNDLAAVNGYVEEMYSGHNVVTSYNAIEQSKERFAVLNHNLYNS
IWKSQFISSMMMPLMFFTGNFAYVLVILVGAALAINGSISIGIIVAFMVYVRTFSQPLSQIAQGITVLQQAGAALVRVLE
FLAEPEMEDDQHKEQQLTAVKGDVAFEDVFFGYKPDQTIIHDFSAQAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIDKGR
ISIDGIDIKDMKRSEVHDAFSMVLQDTWLFEGTIRENLIYNQKHVTDEAVIAAAKAVGVHHFIMTLPQGYDTVLDDTVNL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDELMNQNGFYADLYNSQFVEEDAG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1139618 DQM63_RS02335 WP_002913876.1 451062..452819(+) (rcrQ) [Streptococcus sanguinis strain NCTC7863]
ATGGAAAATAAGAAGCCTTCATTATTTAGCCAGATACGGCCTTATCTCAAAGGCTTCCAGCTTCCTCTTACTTTGGCATT
TGTGGGAGCTGTCTTGTCAAATATTATCACGGTCTATGGGCCAAATAAATTAAAAGAAATTACTAATCTCATTTCTGAAG
GTTTGGCTACCAGCATTGATTTAAAAGCTGTGTCTGAGATTGCCCTTCTGCTGACCGTGCTCTATGCAGTCGGAGCCCTG
CTCAACTACGGGCAGTCCTTTATCATCAGTACGGTTATCCAGTATTTCTCTAAGCGGCTGCGGACGGCCATTGCGGAGAA
GATTAACAAGCTGCCGTTGGGCTATTTCGATGGTCATTCTCAGGGGGATACTCTGTCGCGCGTGACCAATGACGTTGATA
CGGTCGGCCAATCCCTCAACCAGAGTCTAGGTAACGTTATCTCTGCCAGCCTGCTCTTGGTGGCTGTGGTTTTGACTATG
TTCTTCATGAACTGGATCTTGGCCTTGGTAACTATCTTGGCTACTGTATTAGGTTTTGTTTTTGTCGGGCTCATCATGGG
CAAGTCTCAGGGGTATTTCACCGCCCAACAAAACGATCTGGCTGCGGTAAACGGTTATGTGGAGGAGATGTACTCCGGTC
ATAATGTTGTTACCAGCTATAATGCCATTGAGCAGTCTAAGGAGCGCTTTGCAGTTCTTAATCACAATCTCTATAACAGT
ATTTGGAAGTCTCAATTTATCTCTAGCATGATGATGCCGCTCATGTTCTTTACGGGGAATTTTGCTTATGTGCTGGTTAT
TTTAGTCGGTGCTGCTCTGGCGATTAATGGCTCTATTAGTATCGGAATTATCGTCGCCTTTATGGTTTATGTGCGGACTT
TCTCTCAGCCTTTGTCACAGATTGCCCAAGGTATCACCGTCTTGCAGCAGGCTGGTGCAGCACTGGTTCGTGTCCTTGAA
TTTCTGGCTGAGCCTGAGATGGAAGACGACCAGCATAAAGAGCAGCAGCTTACTGCTGTCAAGGGAGATGTTGCCTTTGA
AGATGTCTTCTTCGGTTACAAGCCAGACCAGACAATCATTCATGATTTCTCAGCCCAGGCCAAAGCCGGACAGAAGATTG
CCATTGTCGGCCCAACGGGTGCTGGTAAGACGACCATCGTTAATCTGCTCATGAAGTTCTATGAAATTGACAAAGGGCGT
ATCAGCATTGACGGTATAGATATTAAGGATATGAAACGCTCCGAGGTTCACGATGCCTTTTCAATGGTCTTGCAGGATAC
CTGGCTCTTTGAAGGAACTATCCGAGAGAACTTGATTTACAATCAGAAGCATGTGACAGATGAAGCAGTTATCGCTGCAG
CGAAGGCGGTCGGTGTTCATCACTTTATCATGACTCTGCCGCAGGGCTATGATACGGTGCTGGATGACACGGTCAACTTA
TCGGTCGGTCAGAAGCAGCTGTTGACAATCGCTCGTGCTCTGCTCAAAGATGCGCCGCTCTTGATCTTGGATGAAGCAAC
TTCGTCAGTCGATACGCGGACGGAGGAGCTCATTCAAAAGGCGATGGACAAACTCATGGAAGGCCGGACTTCCTTTGTCA
TTGCCCACCGTCTGTCTACTATCCGTAATGCGGATCTTATCTTGGTCATGCGCGATGGAAATATCATCGAGCAGGGCAAC
CATGATGAACTCATGAATCAGAATGGCTTCTATGCGGACCTCTATAATAGTCAATTTGTAGAGGAAGATGCAGGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.205

99.829

0.701

Multiple sequence alignment