Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQM63_RS02330 Genome accession   NZ_LS483385
Coordinates   449306..451072 (+) Length   588 a.a.
NCBI ID   WP_032911207.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 444306..456072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02305 (NCTC7863_00448) - 444864..446750 (+) 1887 WP_002913880.1 sucrose-specific PTS transporter subunit IIBC -
  DQM63_RS02310 (NCTC7863_00449) scrK 446910..447809 (+) 900 WP_002907200.1 fructokinase ScrK -
  DQM63_RS02315 (NCTC7863_00450) - 447856..448266 (+) 411 WP_002913879.1 peptide deformylase -
  DQM63_RS02320 (NCTC7863_00451) - 448345..448680 (+) 336 WP_002903845.1 hypothetical protein -
  DQM63_RS02325 (NCTC7863_00452) - 448855..449313 (+) 459 WP_002913878.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQM63_RS02330 (NCTC7863_00453) rcrP 449306..451072 (+) 1767 WP_032911207.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02335 (NCTC7863_00454) rcrQ 451062..452819 (+) 1758 WP_002913876.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02340 (NCTC7863_00455) - 453120..454478 (+) 1359 WP_002913875.1 cobyrinate a,c-diamide synthase -
  DQM63_RS02345 (NCTC7863_00456) cbiB 454480..455430 (+) 951 WP_002913874.1 adenosylcobinamide-phosphate synthase CbiB -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65219.58 Da        Isoelectric Point: 5.1882

>NTDB_id=1139617 DQM63_RS02330 WP_032911207.1 449306..451072(+) (rcrP) [Streptococcus sanguinis strain NCTC7863]
MFKLFKRLTVREVSMIVLSVLFTFLTVYLELEVPTYISTITELLQTPGTGLADLWEPGLKMIGLSFASLLSAIVVGFFAA
RIAASFTQSLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQTLITMGLQVVTRGPIMAIWAMTKIIGKSENWLIA
VLIAVIVNILLTVVLVTLAFPKQSVAQRLVDKLNSVTRESLTGIRVVRAYNAEDYQDEKFAAANDEVTRLNLFIGRLMAM
MNPVMMGISSGLTLAIYWIGAYLIQEAGLQERLPLFSDMVVFMSYAMQIVIGFLLMGALFIVLPRTIVSAGRINEVLDLH
SSITSPEHPKAASDSKGEVVFRDVSFRYSKNSEAVIEHVSFTAQAGDTVAFIGSTGSGKSTLVNLIPRFYDVTEGEILVD
GVNVQDYQLEDLHSKVGYIPQKAVLFSGDIESNLDFGQSKESPLDEQKMWEALDLAQAKPFVQEKEKGLKAEVAQSGTNF
SGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAERTQDMTKLIVAQRISTIMDADQILVLDAGKVVGQGT
HRELLSSNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1139617 DQM63_RS02330 WP_032911207.1 449306..451072(+) (rcrP) [Streptococcus sanguinis strain NCTC7863]
ATGTTTAAGTTATTTAAACGGCTGACGGTAAGGGAAGTGAGCATGATTGTTCTCAGTGTGCTCTTCACCTTCCTAACGGT
ATATCTGGAATTAGAAGTTCCAACCTATATTTCGACGATTACAGAGTTGCTGCAAACACCAGGGACTGGTTTGGCAGATT
TGTGGGAGCCAGGTCTGAAAATGATCGGCCTGTCTTTTGCTAGCTTGCTGTCAGCTATTGTGGTTGGCTTTTTTGCCGCT
CGTATAGCAGCCAGCTTTACCCAGAGCTTGCGGAGCGATATTTTCAACCGTGTGCTAGACTATTCGCAGACGGAGATTAA
GAAATTTTCAATCCCTAGTCTGCTGACTCGGACGACAAATGATATTACCCAGGTACAGACCTTAATTACCATGGGGCTTC
AGGTGGTGACCAGGGGACCGATTATGGCGATTTGGGCCATGACCAAGATTATTGGCAAGTCCGAGAACTGGCTGATAGCA
GTTCTTATTGCTGTTATAGTCAATATCCTGCTGACAGTAGTTTTGGTGACATTGGCCTTTCCCAAACAGTCAGTTGCGCA
ACGCTTGGTCGATAAGCTAAACAGTGTCACTAGAGAGAGTCTGACTGGGATTCGCGTGGTCCGGGCTTACAATGCTGAGG
ATTATCAGGATGAGAAATTTGCGGCAGCCAATGATGAAGTAACCCGACTCAATCTTTTCATCGGTCGTCTGATGGCCATG
ATGAATCCAGTTATGATGGGGATTTCTAGCGGTTTGACACTGGCGATTTACTGGATTGGTGCTTATTTGATCCAGGAGGC
TGGGCTGCAGGAGCGTCTCCCACTCTTCAGTGATATGGTCGTCTTTATGTCCTATGCTATGCAGATTGTGATTGGGTTCT
TGCTCATGGGTGCTCTCTTCATCGTCCTGCCTCGGACCATTGTATCCGCTGGCCGGATTAATGAAGTACTGGACCTGCAT
TCTTCTATCACCAGTCCAGAACATCCTAAGGCAGCATCGGATAGCAAGGGAGAGGTGGTCTTTCGAGATGTGTCTTTCCG
CTATTCCAAGAATTCAGAAGCGGTCATTGAGCATGTTAGCTTTACAGCGCAGGCTGGTGATACCGTGGCCTTTATCGGTT
CAACCGGTTCAGGGAAATCCACGCTGGTCAATCTCATTCCTCGTTTCTATGATGTGACTGAAGGAGAGATTTTGGTAGAT
GGCGTCAATGTTCAGGATTACCAGCTGGAAGATCTGCATAGTAAGGTCGGCTACATCCCGCAAAAGGCTGTGCTTTTCTC
TGGCGATATCGAGAGCAATCTGGACTTCGGTCAAAGCAAAGAAAGCCCGCTGGATGAGCAGAAAATGTGGGAGGCTCTTG
ATCTAGCACAGGCTAAGCCCTTTGTCCAAGAGAAGGAAAAAGGGCTGAAAGCAGAAGTGGCTCAAAGCGGGACCAACTTC
TCTGGTGGCCAGCGTCAGCGTTTGGCCATTGCCAGAGCCTTGGCTCGTAAGCCAGAAATCCTCATCTTTGATGATTCCTT
CTCAGCCCTAGACTATAAGACAGACCGCATTTTGCGCAAGGAACTGGCTGAGCGGACGCAGGATATGACTAAGCTGATTG
TGGCACAGCGGATTTCTACTATCATGGATGCGGATCAAATCTTGGTCTTGGATGCTGGTAAGGTGGTTGGTCAAGGTACC
CACCGAGAGCTTTTGTCCAGCAACGAAGTCTATCAAGAAATTGCCTACTCACAACTATCCAAGGAGGAATTAGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(19-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68

100

0.694

Multiple sequence alignment