Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM87_RS08940 Genome accession   NZ_LS483384
Coordinates   1761122..1761835 (+) Length   237 a.a.
NCBI ID   WP_111676868.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13743     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756122..1766835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS08930 (NCTC13743_01777) treC 1757191..1758819 (-) 1629 WP_111705294.1 alpha,alpha-phosphotrehalase -
  DQM87_RS08935 (NCTC13743_01778) treP 1758887..1760911 (-) 2025 WP_111705295.1 PTS system trehalose-specific EIIBC component -
  DQM87_RS08940 (NCTC13743_01779) treR 1761122..1761835 (+) 714 WP_111676868.1 trehalose operon repressor Regulator
  DQM87_RS08950 (NCTC13743_01780) - 1762113..1762444 (-) 332 Protein_1656 winged helix-turn-helix transcriptional regulator -
  DQM87_RS08955 (NCTC13743_01781) - 1762631..1763488 (+) 858 WP_111705296.1 VOC family protein -
  DQM87_RS08960 (NCTC13743_01782) yaaA 1763530..1764261 (+) 732 WP_111705297.1 peroxide stress protein YaaA -
  DQM87_RS08965 (NCTC13743_01783) nrdG 1764435..1765049 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM87_RS08970 (NCTC13743_01784) - 1765049..1765558 (-) 510 WP_011018311.1 GNAT family N-acetyltransferase -
  DQM87_RS08975 (NCTC13743_01785) - 1765567..1766502 (-) 936 WP_009880789.1 Gfo/Idh/MocA family protein -
  DQM87_RS09480 (NCTC13743_01786) - 1766531..1766677 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27594.75 Da        Isoelectric Point: 9.6307

>NTDB_id=1139596 DQM87_RS08940 WP_111676868.1 1761122..1761835(+) (treR) [Streptococcus pyogenes strain NCTC13743]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRAK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1139596 DQM87_RS08940 WP_111676868.1 1761122..1761835(+) (treR) [Streptococcus pyogenes strain NCTC13743]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGAGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment