Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM87_RS07045 Genome accession   NZ_LS483384
Coordinates   1383270..1384079 (-) Length   269 a.a.
NCBI ID   WP_111705168.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13743     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378270..1389079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS07035 (NCTC13743_01416) smc 1378595..1382134 (-) 3540 WP_111705167.1 chromosome segregation protein SMC -
  DQM87_RS07040 (NCTC13743_01417) rnc 1382135..1382827 (-) 693 WP_002990670.1 ribonuclease III -
  DQM87_RS07045 (NCTC13743_01418) vicX 1383270..1384079 (-) 810 WP_111705168.1 MBL fold metallo-hydrolase Regulator
  DQM87_RS07050 (NCTC13743_01419) vicK 1384083..1385435 (-) 1353 WP_002995609.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM87_RS07055 (NCTC13743_01420) vicR 1385428..1386138 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQM87_RS07060 (NCTC13743_01421) - 1386300..1387334 (-) 1035 WP_172453579.1 DUF3114 domain-containing protein -
  DQM87_RS07065 (NCTC13743_01422) - 1387390..1388637 (-) 1248 WP_011017492.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30067.19 Da        Isoelectric Point: 5.5314

>NTDB_id=1139582 DQM87_RS07045 WP_111705168.1 1383270..1384079(-) (vicX) [Streptococcus pyogenes strain NCTC13743]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDKMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1139582 DQM87_RS07045 WP_111705168.1 1383270..1384079(-) (vicX) [Streptococcus pyogenes strain NCTC13743]
ATGAATGAGAGTGGTTTTAAATACAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAAGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.465

100

0.755

Multiple sequence alignment