Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DQM87_RS00815 Genome accession   NZ_LS483384
Coordinates   119736..120689 (+) Length   317 a.a.
NCBI ID   WP_002987790.1    Uniprot ID   A0A5S4TCX5
Organism   Streptococcus pyogenes strain NCTC13743     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114736..125689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS00775 (NCTC13743_00156) - 115563..115928 (+) 366 WP_002986560.1 DUF1033 family protein -
  DQM87_RS00780 (NCTC13743_00157) comYA 116021..116959 (+) 939 WP_111704879.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM87_RS00785 (NCTC13743_00158) comYB 116895..117929 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM87_RS00790 (NCTC13743_00159) comYC 117931..118257 (+) 327 WP_032465607.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM87_RS00795 (NCTC13743_00160) comGD 118232..118660 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  DQM87_RS00800 (NCTC13743_00161) comGE 118617..118901 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  DQM87_RS00805 (NCTC13743_00162) comYF 118894..119328 (+) 435 WP_023612536.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM87_RS00810 (NCTC13743_00163) comGG 119312..119638 (+) 327 WP_002992739.1 competence type IV pilus minor pilin ComGG -
  DQM87_RS00815 (NCTC13743_00164) comYH 119736..120689 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  DQM87_RS00820 (NCTC13743_00165) - 120748..121944 (+) 1197 WP_023612537.1 acetate kinase -
  DQM87_RS00825 - 122131..122439 (+) 309 WP_030126458.1 hypothetical protein -
  DQM87_RS00830 (NCTC13743_00166) proC 122522..123292 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  DQM87_RS00835 (NCTC13743_00167) pepA 123340..124407 (-) 1068 WP_111704880.1 glutamyl aminopeptidase -
  DQM87_RS00845 (NCTC13743_00168) - 124872..125156 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  DQM87_RS00850 (NCTC13743_00169) - 125153..125470 (+) 318 WP_002986515.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35985.08 Da        Isoelectric Point: 4.7205

>NTDB_id=1139553 DQM87_RS00815 WP_002987790.1 119736..120689(+) (comYH) [Streptococcus pyogenes strain NCTC13743]
MTFEKIEEAYQLLLENCQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNSDKLKALCLTKEEWRKAYQFLFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEIMDSS
AHFIQEDAVRPQLLKESDIVISDLPVGYYPNDDIAKRYKVASSDKHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQ
SQLLKQWLKDYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMENFKKWKLSNVN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1139553 DQM87_RS00815 WP_002987790.1 119736..120689(+) (comYH) [Streptococcus pyogenes strain NCTC13743]
ATGACTTTTGAAAAAATTGAAGAAGCTTATCAGCTGCTCTTAGAGAACTGTCAACTAATTGAAAATGATCTAAAAACACA
TATATACGATGCCATTGTTGAACAAAACTCCTTTTATTTAGGGGCTGAGGGAGCTAGTCCTCAAGTTGCTCAAAATAGTG
ATAAACTGAAAGCCTTGTGCCTGACAAAAGAAGAATGGCGTAAGGCCTACCAGTTTCTTTTTATTAAGGCAGCTCAGACT
GAGCAACTCCAAGCCAACCATCAGTTCACACCAGATGCTATTGGCTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
TAAAGATAGCTTAGAGGTACTTGAGATTGGAAGTGGAACAGGGAACCTAGCCCAAACCCTTCTCAACAACACGAGCAAGA
GCCTTGATTATGTAGGGATTGAACTTGATGATCTCTTGATTGATCTGTCAGCCAGTATTGCTGAAATAATGGATTCTTCA
GCTCATTTTATTCAAGAAGATGCGGTAAGGCCTCAATTACTAAAAGAAAGTGACATTGTCATCAGTGACTTACCAGTTGG
TTATTATCCTAACGATGATATTGCCAAACGGTACAAGGTGGCTAGTTCAGATAAGCATACCTATGCCCATCATTTATTAA
TGGAACAGTCTTTAAAATACTTGAAAAAAGACGGTTTTGCGATTTTTCTGGCACCAGTCAATTTATTGACGAGCCCTCAG
AGCCAGTTATTGAAACAGTGGTTAAAAGATTATGCTCAGGTGGTGGCCTTGATTACACTACCAGATTCTATTTTTGGTCA
TCCCTCAAATGCCAAGTCCATTATTGTCTTACAAAAACAAACAGACCACCCAATGGAAACCTTTGTCTATCCAATTCGGG
ATTTGAAGCTTGCAGAGAATATTCATGATTTTATGGAAAATTTCAAAAAATGGAAACTGAGTAATGTCAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TCX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

66.139

99.685

0.659
  comYH Streptococcus mutans UA140

65.823

99.685

0.656

Multiple sequence alignment