Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM67_RS09035 Genome accession   NZ_LS483383
Coordinates   1778217..1779584 (-) Length   455 a.a.
NCBI ID   WP_080553375.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773217..1784584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS09010 (NCTC12479_01750) - 1773416..1774897 (+) 1482 WP_005591611.1 M protein trans-acting positive regulator PRD domain-containing protein -
  DQM67_RS09015 (NCTC12479_01751) - 1775063..1775821 (-) 759 WP_005591610.1 ABC transporter ATP-binding protein -
  DQM67_RS09020 (NCTC12479_01752) - 1775818..1776684 (-) 867 WP_005591609.1 ABC transporter permease -
  DQM67_RS09025 (NCTC12479_01753) - 1776787..1777281 (-) 495 WP_005591608.1 carbonic anhydrase -
  DQM67_RS09030 (NCTC12479_01754) - 1777449..1778144 (-) 696 WP_005591607.1 TIGR00266 family protein -
  DQM67_RS09035 (NCTC12479_01755) radA 1778217..1779584 (-) 1368 WP_080553375.1 DNA repair protein RadA Machinery gene
  DQM67_RS09040 (NCTC12479_01756) - 1779595..1780110 (-) 516 WP_174263559.1 histidine phosphatase family protein -
  DQM67_RS09045 (NCTC12479_01757) - 1780112..1780555 (-) 444 WP_005591604.1 dUTP diphosphatase -
  DQM67_RS09055 (NCTC12479_01758) - 1780641..1781090 (-) 450 WP_005591603.1 8-oxo-dGTP diphosphatase -
  DQM67_RS09065 (NCTC12479_01759) - 1781345..1782034 (-) 690 WP_005591601.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM67_RS09070 (NCTC12479_01760) - 1782204..1782947 (-) 744 WP_005591600.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQM67_RS09075 (NCTC12479_01761) prmA 1782948..1783901 (-) 954 WP_037586111.1 50S ribosomal protein L11 methyltransferase -
  DQM67_RS09080 (NCTC12479_01762) - 1784046..1784516 (-) 471 WP_005591598.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49716.06 Da        Isoelectric Point: 5.7873

>NTDB_id=1139530 DQM67_RS09035 WP_080553375.1 1778217..1779584(-) (radA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEI
EKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGE
RQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEI
RRVNRIEQRINEAAKLGFTKIYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFAG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1139530 DQM67_RS09035 WP_080553375.1 1778217..1779584(-) (radA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATTATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGTCGCTGTCCCAA
CTGCGGCTCTTGGTCTTCTTTTGTTGAGGAAGTGGAGGCCGCAGAAGTCAAGCATGCCCGTGTTTCCCTGACAGGTGAAA
AGACTCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACCAAGACGGAAATGGATGAGTTCAATCGT
GTGCTGGGTGGTGGCGTAGTACCTGGCAGTTTGGTCCTGATTGGCGGGGATCCTGGTATCGGGAAGTCTACCCTGCTTCT
GCAGGTGTCCACTCAGCTTTCTCACCAGGGCACCGTCCTATATGTCAGTGGGGAGGAATCAGCTGAGCAGATTAAGTTGC
GGGCGGAGCGTCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAACATCCGCACAGAGATT
GAGAAAATCAAGCCAGATTTTCTGATTATTGACTCCATTCAGACAGTGATGTCGCCGGAGATTTCCAGTGTTCAAGGCTC
TGTCTCTCAGGTTCGAGAGGTGACAGCTGAGCTTATGCAGCTGGCCAAGACCAATAATATTGCGACCTTTATCGTTGGCC
ACATGACCAAGGAAGGAACCTTAGCTGGTCCCCGAACGCTAGAGCACATGGTGGACACCGTGCTTTATTTTGAAGGCGAA
CGTCAGCACACGTTCCGTATCTTGAGAGCCGTCAAGAACCGCTTTGGCTCAACCAATGAGATTGGCATTTTTGAAATGCA
GTCTGGTGGGCTAGTTGAGGTTGTCAATCCAAGTGAAGTCTTTCTGGAAGAGCGTCTGGACGGCGCAACAGGTTCGTCTA
TTGTCGTGACCATGGAAGGAACGAGGCCGATTTTAGCTGAGGTGCAGGCTTTGGTGACACCGACCATGTTCGGCAATGCC
AAGCGAACCACGACTGGACTGGACTTTAACCGAGCCAGCCTTATCATGGCGGTTCTGGAAAAACGGGCAGGGCTCCTCCT
GCAAAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCAGTAGCGGTCG
CCATTGCTTCCAGCTACAAGGATCTGCCGACTAATCCTCAAGAGTGCTTTATCGGCGAAATCGGCCTGACAGGTGAAATC
CGTCGAGTCAATCGTATCGAGCAGCGCATCAACGAAGCGGCGAAATTGGGTTTCACCAAGATTTATGCTCCCAAAAACTC
TCTGAACGGCCTCAAGGTGCCAGACAATATCCAAGTCATCGGTGTGACAACGATTGGGGAAGTCTTGAAAAAAGTCTTTG
CTGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

92.053

99.56

0.916
  radA Streptococcus pneumoniae Rx1

91.832

99.56

0.914
  radA Streptococcus pneumoniae D39

91.832

99.56

0.914
  radA Streptococcus pneumoniae R6

91.832

99.56

0.914
  radA Streptococcus pneumoniae TIGR4

91.832

99.56

0.914
  radA Streptococcus mitis SK321

91.832

99.56

0.914
  radA Bacillus subtilis subsp. subtilis str. 168

62.009

100

0.624

Multiple sequence alignment