Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM67_RS07985 Genome accession   NZ_LS483383
Coordinates   1583830..1585587 (-) Length   585 a.a.
NCBI ID   WP_005591802.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578830..1590587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07960 (NCTC12479_01549) - 1579082..1579957 (-) 876 WP_005591806.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  DQM67_RS07965 (NCTC12479_01550) - 1580044..1580877 (-) 834 WP_005592302.1 amino acid ABC transporter substrate-binding protein -
  DQM67_RS07970 (NCTC12479_01551) - 1581082..1582218 (-) 1137 WP_005591804.1 amidohydrolase -
  DQM67_RS07975 (NCTC12479_01552) - 1582324..1583418 (-) 1095 WP_005591803.1 DUF4352 domain-containing protein -
  DQM67_RS07985 (NCTC12479_01554) rcrQ 1583830..1585587 (-) 1758 WP_005591802.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07990 (NCTC12479_01555) rcrP 1585577..1587343 (-) 1767 WP_037586253.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07995 (NCTC12479_01556) - 1587336..1587794 (-) 459 WP_005591800.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQM67_RS08000 (NCTC12479_01557) - 1588033..1588602 (-) 570 WP_005591799.1 hypothetical protein -
  DQM67_RS08005 (NCTC12479_01558) - 1588632..1589042 (-) 411 WP_005591798.1 peptide deformylase -
  DQM67_RS08010 (NCTC12479_01559) scrK 1589123..1590022 (-) 900 WP_005591797.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64591.46 Da        Isoelectric Point: 5.0127

>NTDB_id=1139524 DQM67_RS07985 WP_005591802.1 1583830..1585587(-) (rcrQ) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MENKKSSLFNQMRPYLKGFQLPLALAFVGAILSNIITVYGPNKLKEITNLISEGLGSNIDLKAVSQIAFLLAILYAVGAL
LNYGQSFIISTVVQYFSKRLRTAIAEKINKLPLSYFDGHSQGDTLSRVTNDVDTVGQSLNQSLGSVISSSLLLVAVVLTM
FFMNWILALVTILATVVGFVFVGLIMGKSQGYFTAQQNDLAAVNGYVEEMYSGHNVVTSYNAIEQSKERFAVLNHNLYNS
IWKSQFISGMMMPLMFFTGNFAYVLVILVGAALAINGSISIGIIVAFMVYVRTFSQPLSQIAQGITVLQQAGAALVRVFE
FLAEPEMEDEQHKEQQLTAVKGDVAFEDVFFGYKPDQTIIHNFSAQAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIDKGR
ISIDGIDIKDMKRSEVHDAFSMVLQDTWLFEGTIRENLMYNQEHVTDEAVIAAAKAVGVHHFIMTLPQGYDTVLDDTVNL
SVGQQQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDELMDHNGFYADLYNSQFEEGEVA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1139524 DQM67_RS07985 WP_005591802.1 1583830..1585587(-) (rcrQ) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGGAAAATAAGAAGTCTTCATTATTTAACCAGATGCGGCCTTATCTCAAAGGCTTCCAGCTTCCTCTTGCTTTGGCATT
TGTGGGAGCTATCTTGTCGAATATTATCACGGTTTATGGACCAAATAAATTAAAAGAAATTACTAATCTTATTTCAGAAG
GTCTGGGCAGCAATATTGATTTAAAAGCTGTGTCTCAGATTGCCTTTCTCCTCGCTATTCTATATGCAGTCGGAGCTCTG
CTCAACTACGGTCAGTCCTTTATCATCAGTACGGTTGTCCAGTATTTCTCCAAGCGGTTACGGACGGCCATTGCGGAGAA
AATTAACAAGCTTCCCTTGAGCTATTTCGATGGGCATTCTCAGGGGGATACGCTGTCGCGCGTGACTAACGACGTGGATA
CGGTTGGCCAATCTCTTAACCAGAGTTTGGGAAGTGTTATCTCTTCTAGCTTGCTTTTGGTGGCTGTGGTTTTGACTATG
TTCTTCATGAACTGGATTTTAGCTTTGGTGACCATCTTGGCTACTGTAGTCGGTTTTGTCTTTGTCGGCCTCATCATGGG
CAAGTCTCAGGGCTATTTCACTGCTCAACAAAACGATTTAGCTGCTGTTAACGGCTATGTGGAGGAGATGTACTCCGGTC
ATAATGTTGTTACCAGTTATAATGCCATTGAACAGTCAAAGGAGCGTTTTGCAGTTCTCAATCATAATCTCTATAATAGT
ATTTGGAAGTCTCAATTTATCTCTGGCATGATGATGCCGCTCATGTTCTTTACGGGGAATTTTGCCTATGTGCTGGTTAT
TTTGGTCGGTGCTGCTCTGGCGATTAATGGTTCTATTAGCATTGGGATAATTGTTGCCTTTATGGTTTATGTGCGGACCT
TCTCTCAGCCTTTGTCACAGATTGCACAAGGAATCACTGTTTTGCAGCAGGCCGGTGCAGCACTGGTTCGTGTCTTTGAA
TTTCTAGCTGAGCCTGAGATGGAAGACGAGCAGCATAAAGAGCAGCAGCTTACTGCTGTCAAGGGAGATGTTGCCTTTGA
AGATGTCTTCTTTGGCTACAAGCCAGACCAGACGATTATTCATAATTTCTCAGCCCAGGCCAAGGCTGGACAGAAGATTG
CTATTGTCGGCCCGACGGGTGCTGGTAAGACGACCATTGTTAATCTGCTCATGAAGTTCTATGAAATTGACAAAGGGCGT
ATTAGCATTGATGGTATAGATATTAAGGATATGAAGCGCTCAGAGGTTCACGATGCTTTTTCAATGGTCTTGCAGGATAC
CTGGCTCTTTGAAGGAACTATCCGAGAAAACTTGATGTACAATCAGGAGCATGTGACAGATGAAGCAGTTATTGCCGCAG
CGAAGGCGGTCGGTGTTCATCACTTTATCATGACTCTGCCGCAGGGCTATGATACGGTGCTGGATGACACGGTCAACTTA
TCGGTTGGTCAGCAGCAGCTATTGACAATCGCTCGTGCTCTGCTGAAAGATGCGCCGCTCTTGATATTGGATGAGGCAAC
TTCGTCAGTCGATACGCGGACGGAGGAGCTGATTCAAAAAGCCATGGACAAACTTATGGAGGGGCGGACTTCCTTTGTTA
TTGCTCACCGCCTGTCCACTATCCGTAATGCAGATCTTATCTTGGTCATGCGCGATGGAAATATCATTGAGCAGGGCAAC
CACGATGAACTCATGGATCACAATGGCTTCTATGCGGACCTCTATAATAGTCAGTTTGAGGAAGGTGAAGTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.744

100

0.697

Multiple sequence alignment