Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQM67_RS07990 Genome accession   NZ_LS483383
Coordinates   1585577..1587343 (-) Length   588 a.a.
NCBI ID   WP_037586253.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580577..1592343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07970 (NCTC12479_01551) - 1581082..1582218 (-) 1137 WP_005591804.1 amidohydrolase -
  DQM67_RS07975 (NCTC12479_01552) - 1582324..1583418 (-) 1095 WP_005591803.1 DUF4352 domain-containing protein -
  DQM67_RS07985 (NCTC12479_01554) rcrQ 1583830..1585587 (-) 1758 WP_005591802.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07990 (NCTC12479_01555) rcrP 1585577..1587343 (-) 1767 WP_037586253.1 ABC transporter ATP-binding protein Regulator
  DQM67_RS07995 (NCTC12479_01556) - 1587336..1587794 (-) 459 WP_005591800.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQM67_RS08000 (NCTC12479_01557) - 1588033..1588602 (-) 570 WP_005591799.1 hypothetical protein -
  DQM67_RS08005 (NCTC12479_01558) - 1588632..1589042 (-) 411 WP_005591798.1 peptide deformylase -
  DQM67_RS08010 (NCTC12479_01559) scrK 1589123..1590022 (-) 900 WP_005591797.1 fructokinase ScrK -
  DQM67_RS08015 (NCTC12479_01560) - 1590182..1592068 (-) 1887 WP_005591796.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65381.88 Da        Isoelectric Point: 5.4385

>NTDB_id=1139525 DQM67_RS07990 WP_037586253.1 1585577..1587343(-) (rcrP) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MIKLFKRLTVREVSMIVLSVLFTFLTVYLELEVPTYISTITELLQTPGTVLADLWEPGLKMLGLSFASLLSAIVVGFFAA
RIAASFTQSLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQTLITMGLQVVTRGPIMAIWAITKIIGKSENWLIA
VLIAVIVNVLMTVVLVTLAFPKQSVAQRLVDKLNSVTRESLTGIRVVRAYNAEDYQDEKFAVANDEVTRLNLFINRLMAM
MNPVMMGISSGLTLAIYWIGAYLIQEAGLQERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTIVSADRINEVLDLH
SSITSPEHPKAATDSKGEVVFRDVSFRYSKNSEAVIEHVSFTAHAGDTVAFIGSTGSGKSTLVNLIPRFYDVTEGEILVD
GVNVQDYQLEDLRNKVGYIPQKAVLFSGDIESNLDFGQSKESPLNEQKMWEALDLAQAKPFVQEKEKGLKAEVAQSGTNF
SGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAERTQDMTKLIVAQRISTIMDADQILVLDAGKVVGQGT
HRELLANNAVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1139525 DQM67_RS07990 WP_037586253.1 1585577..1587343(-) (rcrP) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGATTAAGCTATTTAAACGGCTGACGGTAAGGGAAGTGAGCATGATTGTTCTCAGTGTGCTCTTCACCTTCCTGACGGT
TTATTTGGAATTAGAGGTTCCAACCTATATTTCGACGATTACAGAGCTACTACAAACGCCGGGAACAGTTTTAGCAGATT
TGTGGGAACCGGGATTGAAAATGCTCGGCTTATCCTTTGCTAGTTTGCTGTCAGCTATTGTGGTTGGCTTTTTTGCCGCT
CGTATAGCAGCTAGCTTTACTCAGAGTTTGCGGAGCGATATTTTCAACCGTGTGCTGGATTATTCGCAGACAGAGATTAA
GAAATTTTCAATTCCTAGTTTGCTGACTCGGACAACGAATGACATTACTCAGGTACAGACCTTAATCACCATGGGGTTGC
AGGTGGTGACCAGGGGGCCGATTATGGCGATTTGGGCCATTACTAAGATTATCGGTAAGTCCGAGAACTGGCTGATTGCT
GTTCTTATTGCTGTGATTGTCAATGTTCTAATGACAGTAGTTTTGGTTACACTGGCCTTTCCCAAGCAGTCAGTGGCGCA
GCGTTTGGTCGATAAGCTAAATAGCGTCACTAGAGAGAGTCTGACTGGGATTCGCGTGGTTCGAGCTTATAATGCTGAGG
ATTATCAGGATGAGAAATTTGCGGTGGCCAATGATGAAGTGACTCGCCTTAACCTCTTCATTAATCGTTTGATGGCTATG
ATGAATCCAGTTATGATGGGGATTTCTAGCGGTTTGACACTGGCTATTTACTGGATTGGTGCTTATTTGATTCAGGAGGC
TGGGCTGCAGGAGCGTCTCCCGCTCTTCAGTGACATGGTCGTCTTTATGTCCTATGCTATGCAGGTTGTGATGGGCTTCT
TGCTCATGGGTGCCCTCTTTATCGTCCTGCCTCGGACCATTGTATCGGCTGACCGGATTAATGAGGTGCTGGATCTGCAT
TCTTCTATCACCAGTCCAGAACATCCTAAGGCAGCAACAGATAGCAAAGGAGAGGTGGTCTTTCGAGATGTGTCCTTCCG
CTATTCCAAGAATTCTGAAGCGGTCATTGAGCATGTCAGCTTTACAGCGCATGCTGGTGATACTGTAGCCTTTATCGGCT
CAACTGGTTCAGGGAAATCTACTCTTGTCAATCTCATCCCTCGTTTCTACGATGTGACAGAAGGAGAGATTCTGGTAGAT
GGCGTCAATGTTCAGGATTACCAGCTAGAAGACCTACGCAATAAGGTTGGCTACATCCCGCAAAAGGCGGTGCTTTTCTC
TGGTGATATCGAGAGCAATCTGGACTTCGGTCAAAGCAAAGAAAGCCCGCTGAATGAGCAGAAAATGTGGGAAGCTCTTG
ACCTAGCTCAGGCCAAGCCTTTTGTTCAAGAGAAGGAAAAGGGGCTGAAAGCAGAAGTGGCTCAAAGCGGGACCAACTTC
TCTGGTGGTCAGCGTCAGCGTTTGGCCATTGCCAGAGCTTTGGCTCGTAAGCCAGAAATCCTCATCTTTGACGACTCCTT
CTCAGCGCTAGACTATAAGACAGACCGCATTTTGCGCAAGGAACTGGCTGAGCGAACGCAGGATATGACCAAGCTGATCG
TAGCACAGCGGATTTCTACCATCATGGATGCGGATCAAATCTTGGTCTTGGATGCTGGTAAGGTAGTCGGTCAAGGTACC
CACCGAGAGCTTTTGGCAAATAACGCGGTTTATCAAGAAATTGCCTACTCACAACTATCCAAGGAGGAATTAGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(19-292)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.667

100

0.701

Multiple sequence alignment